Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq157 147 5e-30 seq55 125 2e-23 seq593 107 5e-18 seq43 104 6e-17 >seq157 Length=157498 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 ||||||||||| ||||||||||| |||| ||||||||| || ||| | ||| || ||| Sbjct 62330 ACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCGTCCTCC 62389 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | |||||| || || ||||| ||||| |||||||| || ||||||||| |||||| Sbjct 62390 AACTGCTTGCCAGCAAAGATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGA 62449 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| ||||||||| |||| | ||| | | ||||| || | || || ||||| Sbjct 62450 ATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCTACGTCGAGAGTTATAGTCTTT 62509 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| | ||| || || ||||| || Sbjct 62510 CCCGTCAAAGTCTTGACGAAAATCTG 62535 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 |||||||| || ||||||||||| |||| |||||||||| |||||| | ||| || ||| Sbjct 62558 ACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCACTCAAAGTACGTCCGTCCTCC 62617 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | |||||| || || ||||| ||||| ||||| || || ||||||||| |||||| Sbjct 62618 AACTGCTTGCCAGCAAAGATTAGACGTTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGA 62677 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| ||||||||| |||| | ||| | | || ||||| | || || ||||| Sbjct 62678 ATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCCACATCGAGAGTTATAGTCTTT 62737 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| | ||| || || ||||| || Sbjct 62738 CCCGTCAAAGTCTTGACGAAAATCTG 62763 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 |||||||| || |||||||| || |||| ||||||||| |||||| | ||| |||||| Sbjct 62102 ACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTACGTCCGTCTTCC 62161 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | |||||| || || || |||||||| |||||||| || ||||||||| |||||| Sbjct 62162 AACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGA 62221 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| ||||||||| |||| | ||| | | |||||||| | || || ||||| Sbjct 62222 ATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCTACATCGAGAGTTATAGTCTTC 62281 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| | || || || || || || Sbjct 62282 CCCGTCAACGTCTTGACGAAGATCTG 62307 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 ||||||||||| |||||||| || || | ||| ||||| ||| || | || || ||| Sbjct 63014 ACAAGGTGGAGGGTCGACTCTTTCTGAATGTTATAGTCGCTCAACGTACGACCGTCCTCC 63073 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | |||||| ||||| ||||| ||||| |||||||| || ||||||||| |||||| Sbjct 63074 AACTGCTTGCCGGCAAAGATTAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGA 63133 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| ||||||||| |||| | ||| | | || ||||| | ||||| ||||| Sbjct 63134 ATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACATCAAGAGTGATTGTCTTT 63193 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| || Sbjct 63194 CCCGTCAGCGTCTTTACAAAAATCTG 63219 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 |||||||| || |||||||| || |||| ||||||||| || ||| | || || ||| Sbjct 62786 ACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCC 62845 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | |||||| || || || |||||||| |||||||| || ||||||||| |||||| Sbjct 62846 AACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGA 62905 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| ||||||||| |||| | ||| | | || || || | ||||| ||||| Sbjct 62906 ATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCAACGTCAAGAGTGATTGTCTTT 62965 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| | ||| || || ||||| || Sbjct 62966 CCCGTCAAAGTCTTGACGAAAATCTG 62991 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || || || || || |||||||||||||| ||| | |||||| ||| |||||| ||||| Sbjct 62184 CTCATTTTTGCTGGCAAGCAGTTGGAAGACGGACGTACTTTGAGCGACTACAACATCCAG 62125 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 |||||||| || ||||||||||| ||| | || || Sbjct 62124 AAAGAGTCGACCCTTCACCTTGTGTTGCGCCTGCG 62090 >seq55 Length=263441 Score = 125 bits (138), Expect = 2e-23 Identities = 157/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || ||||| || ||||| || || || | |||||||| |||||||||| |||||||| Sbjct 150833 ACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCCGCCAAAGTCCGGCCATCTTCG 150892 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 |||||||| || || ||||| |||||||||||||| || ||| ||||| |||||| Sbjct 150893 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTGTCCTGA 150952 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 || || || || || || | | | || | | || || |||| ||| || ||||| Sbjct 150953 ATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATGGTCTTG 151012 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| || || || || ||||| || |||||| Sbjct 151013 CCCGTCAGGGTCTTGACGAAAATCTG---CATTTT 151044 >seq593 Length=12966 Score = 107 bits (118), Expect = 5e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||| | ||||||||| || | | | |||||||| || ||||| || || |||| Sbjct 9108 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 9167 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | |||||||||||| || ||| ||||| ||||| || || ||||| || | Sbjct 9168 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGT 9227 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | | |||||| | ||| || |||| ||| || ||||| ||||| | ||||| |||| Sbjct 9228 CAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTTTTGACAA 9287 Query 199620 AAATTTG 199626 |||| || Sbjct 9288 AAATCTG 9294 >seq43 Length=290853 Score = 104 bits (114), Expect = 6e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||| | ||||||||| || | | | |||||||| || ||||| || || |||| Sbjct 97873 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 97932 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | |||||||||||| || ||| ||||| ||||| || || ||||| || | Sbjct 97933 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGT 97992 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | | |||||| | ||| || |||| ||| || ||||| ||||| | || || |||| Sbjct 97993 CAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAA 98052 Query 199620 AAATTTG 199626 |||| || Sbjct 98053 AAATCTG 98059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178893157411161