Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq593 122 1e-22 seq43 116 4e-21 seq55 111 2e-19 seq157 93.3 5e-14 >seq593 Length=12966 Score = 122 bits (134), Expect = 1e-22 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 ||||||| || |||||||| | || | || | || || || |||||||| || || | Sbjct 9108 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 9167 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||||||||| | ||| | || ||||||||| ||| |||| ||| | | | | Sbjct 9168 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTA-CATTG 9226 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | |||| || |||||| |||| ||| ||||| |||||||||| |||||| ||| Sbjct 9227 TCAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTTTTGACA 9286 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 9287 AAAATCTGCAT 9297 >seq43 Length=290853 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 ||||||| || |||||||| | || | || | || || || |||||||| || || | Sbjct 97873 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 97932 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||||||||| | ||| | || ||||||||| ||| |||| ||| | | | | Sbjct 97933 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTA-CATTG 97991 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | |||| || |||||| |||| ||| ||||| |||||||||| ||| || ||| Sbjct 97992 TCAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACA 98051 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 98052 AAAATCTGCAT 98062 >seq55 Length=263441 Score = 111 bits (122), Expect = 2e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| || |||| || || || || ||||||||||| | | ||| || | Sbjct 150826 ACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCCGCCAAAGTCCGGCC 150885 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||||||||| || || |||| ||||||||||||| || | | ||||| Sbjct 150886 ATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTT 150945 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCCACCGTGA 46556 |||| || |||| |||| | | | || | | || | ||||| |||| ||| | Sbjct 150946 GTCCTGAATTTTCTGTTTGA-CATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAA 151004 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 |||| ||||||||||| || || || || || |||||||| Sbjct 151005 TGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCATTTT 151044 >seq157 Length=157498 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| || || | || ||| || || || || |||||| | || || | Sbjct 63007 ACGCAACACAAGGTGGAGGGTCGACTCTTTCTGAATGTTATAGTCGCTCAACGTACGACC 63066 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | |||||||||||| || || | || |||||||| | || | | ||||| Sbjct 63067 GTCCTCCAACTGCTTGCCGGCAAAGATTAGACGTTGCTGGTCAGGGGGAATTCCTTCCTT 63126 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||||||| ||| | ||| | | | || |||| | || ||||| | |||| Sbjct 63127 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCGGAAGGCTCAACATCAAGAGTGA 63185 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | || || ||||||||||| || ||||| || |||||| Sbjct 63186 TTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCATT 63223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565225095701160