Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 168 7e-37 seq157 100 3e-16 >seq1 Length=763219 Score = 168 bits (186), Expect = 7e-37 Identities = 397/593 (67%), Gaps = 10/593 (2%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCA- 132952 ||| |||||||| |||| |||||||||| | ||| || ||||| ||||| | Sbjct 607179 GCACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTT--TGAAAAGCTT 607236 Query 132953 AG-CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAG 133011 || || ||||| | ||||| || ||||||||||| |||| | ||| ||| || || Sbjct 607237 AGACCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGAAA 607296 Query 133012 AAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCC---GAACGTGGCTTCTTTG 133068 || | ||| || || || || || |||| || || || | | | | | | | | Sbjct 607297 AAAATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACC-CGTGG 607355 Query 133069 CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATG 133128 | || ||| ||| ||||| | || |||| ||||||| || || || ||||| Sbjct 607356 ATCGCA--CCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATA 607413 Query 133129 GCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAA 133188 || | | | || ||||| || | | || ||||| || | ||| Sbjct 607414 GCACGTAGTAGATGGTCCTTCTCAATCGCGTCTTTAATATACGTGTCAATCAAAAGCGAG 607473 Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCG 133248 |||| ||||||||||| ||||| || ||||||||||| ||||||||||| || ||||| Sbjct 607474 TACACTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCT 607533 Query 133249 ACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTG 133308 |||||||||||| | ||| | | | |||||||| || || |||||||| || Sbjct 607534 GGCACCTGCACTTCGTTGCTAAAATTCATGGCTAGATTTTCATTCACAATGCCGTCACTA 607593 Query 133309 GCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCC 133368 || || || || || ||||| ||||| ||||||| ||||||||||| | | || || Sbjct 607594 GCAGCAAAGAAAGCGAGCACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAGCC 607653 Query 133369 CAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCT 133428 || || | || | ||| || | ||||| | |||||||| || || || ||| Sbjct 607654 CAATCTTTCAGATCGTGCACCAGATCGAGTTCCTCAGCTGTCCAAAAAGAAGCTTCAGCT 607713 Query 133429 TTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCG 133481 || |||||||| ||||| || | || |||||||| | |||||| || Sbjct 607714 TTCTTGTACATCTGCCACACTTCGTGCTCCTGAATGGGAAAGAGCACAAAGCG 607766 >seq157 Length=157498 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | ||||| || || ||||| | ||||| ||| | | Sbjct 62994 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCT 62935 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || || | ||||| || ||||||||| | ||||| Sbjct 62934 GACTCGATCGATAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCA 62876 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||||| || ||||| ||| |||| |||| || || || | ||||||||| Sbjct 62875 GCAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAA 62816 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || |||| || || | ||| |||| || | || ||| Sbjct 62815 CATCCAGAAAGAGTCGACCCTTCACCTTGTGTTGCGCCTGCGTGGAGGC 62767 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | ||||| || || || || |||| || ||| | || Sbjct 62310 ATGCAGATCTTCGTCAAGACGTTGACGGGGAAGACTATAACTCTCGATGTAGAGCCTTCC 62251 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || || | ||||| || ||||||||| | ||||| Sbjct 62250 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCA 62192 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||||| || ||||| ||| |||| |||| || || | | ||||||||| Sbjct 62191 GCAACGTCTCATTTTTGCTGGCAAGCAGTTGGAAGACGGACGTACTTTGAGCGACTACAA 62132 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || || |||| || || | ||| |||| Sbjct 62131 CATCCAGAAAGAGTCGACCCTTCACCTTGTGTTGCG 62096 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | ||||| || || || || ||||||| ||| | | Sbjct 62538 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACTATAACTCTCGACGTAGAGCCTTCT 62479 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || || | ||||| || |||||||| | ||||| Sbjct 62478 GACTCGATCGATAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCA 62420 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | || ||||| ||| |||| |||| || || || | ||||||||| Sbjct 62419 GCAACGTCTAATCTTTGCTGGCAAGCAGTTGGAGGACGGACGTACTCTGAGCGACTACAA 62360 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| || || | ||| ||||| || | || || Sbjct 62359 CATCCAGAAGGAGTCGACCCTCCACCTTGTGTTGCGTCTGCGTGGAGG 62312 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | ||||| || || || || |||| || ||| | || Sbjct 62766 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACTATAACTCTCGATGTGGAGCCTTCC 62707 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || || | ||||| || ||||||||| | || || Sbjct 62706 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGATCA 62648 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | || ||||| ||| |||| |||| || || | | |||||||| Sbjct 62647 GCAACGTCTAATCTTTGCTGGCAAGCAGTTGGAGGACGGACGTACTTTGAGTGACTACAA 62588 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| || || | ||| ||||| || | || || Sbjct 62587 CATCCAGAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCGTGGAGG 62540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500161027182720