Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq55 123 1e-22 seq593 107 8e-18 seq43 102 3e-16 seq157 95.1 5e-14 >seq55 Length=263441 Score = 123 bits (136), Expect = 1e-22 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || || ||||| || || || ||||| || || || || | || Sbjct 151042 AATGCAGATTTTCGTCAAGACCCTGACGGGCAAGACCATTACGCTGGACGTGGAGCCCTC 150983 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| |||||| | | ||||| |||||||| || |||||||| ||||| || || || Sbjct 150982 GGATAGCATTGACAATGTCAAACAGAAAATTCAGGACAAGGAAGGGATTCCACCCGACCA 150923 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | || || | || || || || |||||||| | ||||||||||| || || Sbjct 150922 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGGACTTTGGCGGACTACAA 150863 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATT 391261 |||| | || || | || || ||| | || || Sbjct 150862 TATTCAGAAAGAATCGACGCTGCACCTCGTGTT 150830 >seq593 Length=12966 Score = 107 bits (118), Expect = 8e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | ||||| || ||||| |||| || || || ||||| || || || ||| | Sbjct 9300 ATCATGCAGATTTTTGTCAAAACGTTGACGGGCAAGACCATTACGCTGGACGTGGAACCG 9241 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 || || | |||||| | | || || ||||| || || |||||||| ||||| ||||| Sbjct 9240 TCAGACAGCATTGACAATGTAAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGAC 9181 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 || || ||||| || || | || || |||||||||||||| | | | ||||| || Sbjct 9180 CAGCAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTTCACTTGCGGACTAC 9121 Query 391227 AATATTGATAAGGATGC 391243 || ||| | |||| ||| Sbjct 9120 AACATTCAAAAGGGTGC 9104 >seq43 Length=290853 Score = 102 bits (112), Expect = 3e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || |||| || || || ||||| || || || ||| | || Sbjct 98062 ATGCAGATTTTTGTCAAGACGTTGACGGGCAAGACCATTACGCTGGACGTGGAACCGTCA 98003 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || ||||| || || |||||||| ||||| ||||| || Sbjct 98002 GACAGCATTGACAATGTAAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 97943 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || || | || || |||||||||||||| | | | ||||| || || Sbjct 97942 CAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTTCACTTGCGGACTACAAC 97883 Query 391230 ATTGATAAGGATGC 391243 ||| | |||| ||| Sbjct 97882 ATTCAAAAGGGTGC 97869 >seq157 Length=157498 Score = 95.1 bits (104), Expect = 5e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || |||| || || ||||| ||||| ||||| || | || Sbjct 62766 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACTATAACTCTCGATGTGGAGCCTTCC 62707 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || || || | || || || ||||| || |||||||||||||| |||||||| Sbjct 62706 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGATCAG 62647 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| |||| || | || || || | || || ||| | |||||| || || || Sbjct 62646 CAACGTCTAATCTTTGCTGGCAAGCAGTTGGAGGACGGACGTACTTTGAGTGACTACAAC 62587 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | ||||| | || |||||| | || || | ||| | ||| Sbjct 62586 ATCCAGAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCGTGGA 62542 Score = 87.8 bits (96), Expect = 7e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 391046 TATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATC 391105 || |||| | ||||| || || || ||||| || || || || |||||||||||||| | Sbjct 63226 TACAATGCAGATTTTTGTAAAGACGCTGACGGGAAAGACAATCACTCTTGATGTTGAGCC 63167 Query 391106 ATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGA 391165 || || || || | || || || ||||| || |||||||||||||| ||||| Sbjct 63166 TTCCGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGA 63107 Query 391166 TCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTA 391225 || |||||| |||| || | || || || | || || || | || ||| || || Sbjct 63106 CCAGCAACGTCTAATCTTTGCCGGCAAGCAGTTGGAGGACGGTCGTACGTTGAGCGACTA 63047 Query 391226 TAATATTGATAAGGATGCAACACTTCACTTAGTATT 391261 ||| ||| | || || | || || ||| | || || Sbjct 63046 TAACATTCAGAAAGAGTCGACCCTCCACCTTGTGTT 63011 Score = 86.0 bits (94), Expect = 2e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||| || || ||||| ||||| ||||| || | || Sbjct 62310 ATGCAGATCTTCGTCAAGACGTTGACGGGGAAGACTATAACTCTCGATGTAGAGCCTTCC 62251 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || || || | || || || ||||| || |||||||||||||| ||||| || Sbjct 62250 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCAG 62191 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | ||||| | || || || | ||||| ||| | |||||| || || || Sbjct 62190 CAACGTCTCATTTTTGCTGGCAAGCAGTTGGAAGACGGACGTACTTTGAGCGACTACAAC 62131 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | || || | || |||||| | || || Sbjct 62130 ATCCAGAAAGAGTCGACCCTTCACCTTGTGTT 62099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975670733941364