Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4 136 5e-27 seq1 125 9e-24 seq317 95.1 2e-14 >seq4 Length=584709 Score = 136 bits (150), Expect = 5e-27 Identities = 352/531 (66%), Gaps = 9/531 (2%) Strand=Plus/Plus Query 111710 CCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTT 111769 |||||| ||||| || ||||| ||||| || || || | || || | || || || Sbjct 119302 CCACGCGACACCGACGCTCTTTAACGCAGGCACTCCTCGTCCACAGCTCTCGTCGTGCTT 119361 Query 111770 CCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGC 111829 || | || | | || || || || | |||||||| | ||| |||| ||||||| Sbjct 119362 TCTCTTGGCCATGCAAGATGACTCGATTGAAGGCATTTATGACACGCTCAAGCAATGTGC 119421 Query 111830 CCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAA 111889 || || || ||||| || || |||||||| || || | | | |||| ||| Sbjct 119422 GTGCATTTCGAAATGGGCCGGCGGGATCGGGATCAGTATGCACAACATTCGTGCCACCAA 119481 Query 111890 GTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATT 111949 || |||| || || || || |||| || ||||||||| | ||||| || Sbjct 119482 CAGCTACATCCGAGGCACGAACGGGTCGTCGAATGGCATCATTCCAATGTTGCGCGTCTT 119541 Query 111950 TAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGT 112006 || | ||| ||||| || || | |||| ||| | ||||| || || | || | Sbjct 119542 CAATGACACGGCGCGGTACGTTGATCAAGGTGGTGGGAAGCGCAAAGGCTCGTTTGCCAT 119601 Query 112007 CTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGG 112066 |||||| ||||| |||||||| ||| | | ||||| || |||||||| ||||| || Sbjct 119602 CTATCTAGAGCCCTGGCACGCCGATGTGTTTGAGTTTCTAGAGTTGCGGAAAAACCACGG 119661 Query 112067 TGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCA 112125 | ||| | || ||| || ||| | || | || | ||| | || |||||||| | Sbjct 119662 CAACGAGTTGCATCG-TGCTCGGGATTTGTTTTTTGCCTTGTGGGTCCCGGATCTCTTTA 119720 Query 112126 TGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTC 112185 ||||| | || || | | ||||| ||| |||||||||||| || | || || |||| Sbjct 119721 TGAAGCGCGTGGAAGCCAATGGCACGTGGAGTCTCTTTTGTCCCAACGAAGCGCCGGGTC 119780 Query 112186 TCTCCGATGCCGT--GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGA 112234 | | ||| ||| |||||| | |||||| ||| | ||| ||||||| Sbjct 119781 TGTACGA--ACGTTGGGGTGACGCGTTTGAGGCCTTGTACGTCCAGTACGA 119829 Score = 104 bits (114), Expect = 3e-17 Identities = 372/575 (65%), Gaps = 19/575 (3%) Strand=Plus/Plus Query 112764 GGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATG 112823 ||||| || || || || |||| || || || |||||| | |||||||||| ||| Sbjct 120353 GGTCCGTACGAGACGTTCAAGGGGTCGCCCGCGAGTCAAGGGATCTTTCAATTTGACATG 120412 Query 112824 TGGG-----AAGGTGAGACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCA 112878 |||| | | | | | || || | || |||| || || |||||| ||| Sbjct 120413 TGGGGCGTCACGCCGTCATCGGGCCTC--TGGGATTGGGCGGCACTGAAGGAAAAGGTCA 120470 Query 112879 AGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCAC 112938 | || | || || || ||| || ||| | || || ||||| || || || ||||| | Sbjct 120471 TGCAGCATGGGCTCCGGAACTCGCTCTTGGTCGCGCCCATGCCCACGGCGTCGACCGCTC 120530 Query 112939 AAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAA 112998 |||||||||| || || |||| |||| |||| ||| | ||||| || | | Sbjct 120531 AAATCTTGGGCAACAACGAATCGATTGAGCCCTTTACGTCCAACATGTACAATCGCCGCG 120590 Query 112999 CCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTG 113058 | | || || |||||| ||| || |||||| |||| || | || || | || |||| Sbjct 120591 TCTTGGCTGGCGAGTTTACGATCGTAAACAAGTATCTGATGAAAGAGCTGATTGA-ATTG 120649 Query 113059 GTC-TCTGG----TCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCA 113113 | | ||||| ||||| || | ||| || |||| | ||||| ||| | || Sbjct 120650 GGCATCTGGACGCCCCAAG----TGCGGAATCAGATTCTGAACGACGGTGGGTCCGTGCA 120705 Query 113114 AAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAA 113173 ||| || | | ||||||| | || | |||| ||||| ||||| ||||| Sbjct 120706 AAAGATCCACGCACTGCCAGATGCCGTGAAAGAAAAGTACAAGACAGTGTGGGAGATCAA 120765 Query 113174 GATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGC-TTCATTGATCAAAGTCAAA 113232 | |||| || | || || |||| |||||||| ||| || ||| ||| |||||| Sbjct 120766 GCAAAAGGCCGTGCTCGATCTGTCCGCGGATCGTGG-CGCGTTTATTTGTCAGAGTCAAT 120824 Query 113233 GTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACA 113292 |||| | ||| | || ||||| ||| ||| | || |||||| | ||| Sbjct 120825 CGTTGAACATTCACATTGCGGACCCGACGATTAGCAAACTCACGTCCATGCACTTTTACG 120884 Query 113293 GTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 ||||| || || ||||| ||||| ||||| ||| Sbjct 120885 CGTGGAAAAAAGGGCTCAAGACGGGCATGTACTAC 120919 >seq1 Length=763219 Score = 125 bits (138), Expect = 9e-24 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG-TCGCGTTCCTTTGCTGAGCG 102184 || |||||| | |||||| ||||||||| ||| || | || | ||||| | | || || Sbjct 607388 AAAAAAGCGCACTGGGCTCTGAAGTGGTGCGATCCACGGGTCTC-TTCCTATCCAGAACG 607330 Query 102185 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 102244 || || || ||||| ||||| || || || |||||||| || |||||| | || | Sbjct 607329 GCTTTTGGCCTTTGCTGCAGTTGAAGGCATTTTTTTCTCTGGCTCATTCTGCTCCATCTT 607270 Query 102245 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 102304 ||||||||||||||| ||| | ||||| ||||| |||| || ||||||||||| || Sbjct 607269 TTGGCTCAAGAAGCGCGGTTTAATGCCTGGTCTAAGCTTTTCAAACGAGCTTATTAGCCG 607210 Query 102305 TGACGAGGGACTCCACCAAGAGTTTGCG 102332 |||||||| | ||| || |||||| Sbjct 607209 GGACGAGGGTATGCACACGGACTTTGCG 607182 >seq317 Length=75193 Score = 95.1 bits (104), Expect = 2e-14 Identities = 248/371 (67%), Gaps = 17/371 (5%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || |||||||| || || ||| || ||| ||| || | || | |||||| || || Sbjct 7782 CGGTCAAAGCGCCCCGGACGACAAAGTGCGGGATCGAGTACTTCTAGGCGATTTGTCGCT 7841 Query 15945 GCGATGACAA-CAATACCTG----TTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCT 15999 || | |||| || | | | |||| || |||| |||||||| |||||||| | || Sbjct 7842 GCAAGCACAATCACTCCATTAGCCTTTCCTT--CAAACCCATCCATTTCTGTCAACAACT 7899 Query 16000 GGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTC 16059 | || | || ||||| |||||||| || | || || ||| ||| | ||| Sbjct 7900 GATTGAGCGTCTGTTCTCGTTCATCGTTTGAATTGATTCCGCCAC----GCGCT--TTTG 7953 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC-- 16117 ||| ||||||||||||||||| || ||||| || | ||| | |||| | || | Sbjct 7954 CCAGCGCATCAATCTCATCAATAAAAACGATACACTG-TGAGTACTGCGA-TGCCTGCGT 8011 Query 16118 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 16177 |||||| |||||||| || || || ||| || | |||||| ||||||| | || Sbjct 8012 AAAGAGGTCCCGTACTCGAGCTGCACCGCGACCCACTAGCATCTCGACAAAGTCCGATGC 8071 Query 16178 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 || || || || | || | ||| || | |||||||||||||||||||| Sbjct 8072 CGAGCAAAAGAGAAATGCTACGCCTGCTTCGGAGGCTACTGCTCGGGCGAGAAGAGTCTT 8131 Query 16238 ACCCGTACCTG 16248 || || |||| Sbjct 8132 GCCTGTTCCTG 8142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620727789275760