Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4 141 1e-28 seq216 118 1e-21 seq8 89.7 6e-13 >seq4 Length=584709 Score = 141 bits (156), Expect = 1e-28 Identities = 436/668 (65%), Gaps = 10/668 (1%) Strand=Plus/Minus Query 110375 CCAAGTTCTT-CTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTA 110433 ||||| | || ||| ||||||||| ||| || || |||||||||||||| ||| Sbjct 119967 CCAAGGTTTTGCTGGTTCGATTTGCGGTTCGCGGCGTCTTTATAGAGCATGTAAGGGACG 119908 Query 110434 CCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACAT-CGGCGGCGGGGACAGT--T 110490 || || || |||| | | ||| || || ||||| | | ||| | || || | Sbjct 119907 CCCGTCTCAATCTGAGCGTCGAGGATCGCAAACCATAGTTGCTGCG-CATTGATCGTCTT 119849 Query 110491 GCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTAC 110550 ||| || | ||||||| ||||||| | ||||||| ||||||| | | || | Sbjct 119848 GCGG--GCACGGCCTTCCTGTTCGTACTGGACGTACAAGGCCTCAAACGCGTCACCCCAA 119791 Query 110551 ACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCA 110610 || | |||||| ||| | || |||||| ||||| ||| | ||| | || Sbjct 119790 CGTTCGTACAGACCCGGCGCTTCGTTGGGACAAAAGAGACTCCACGTGCCATTGGCTTCC 119731 Query 110611 ACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCC 110670 || | |||||| || || || || | ||||| || | || | || || |||| | Sbjct 119730 ACGCGCTTCATAAAGAGATCCGGGACCCACAAGGCAAAAAACAAATCCCGAGCACGATGC 119671 Query 110671 TCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGT 110730 || | || ||||| || | ||| | ||| || | | ||| | |||||| || Sbjct 119670 AACTCGTTGCCGTGGTTTTTCCGCAACTCTAGAAACTCAAACACATCGGCGTGCCAGGGC 119611 Query 110731 TCGAGATAGACAGCGATGGATCCCTTACGA---CGACCCGCCTGGTTAACATAGCGTGCT 110787 || ||||||| || | || || || || | ||| | || | ||| || || || Sbjct 119610 TCTAGATAGATGGCAAACGAGCCTTTGCGCTTCCCACCACCTTGATCAACGTACCGCGCC 119551 Query 110788 GTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTA 110847 ||| |||||||||| | | ||| ||||| || |||| || || || || || | Sbjct 119550 GTGTCATTGAAGACGCGCAACATTGGAATGATGCCATTCGACGACCCGTTCGTGCCTCGG 119491 Query 110848 ATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTA 110907 || | || |||||||||||| ||| ||| || || || || || ||||| || Sbjct 119490 ATGTAGCTGTTGGTGGCACGAATGTTGTGCATACTGATCCCGATCCCGCCGGCCCATTTC 119431 Query 110908 CTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTG 110967 ||| ||||| | |||| || ||||||| || |||||||| || | | || Sbjct 119430 GAAATGCACGCACATTGCTTGAGCGTGTCATAAATGCCTTCAATCGAGTCATCTTGCATG 119371 Query 110968 GCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGT 111027 || | |||||||| || || | ||| |||||||| || || || || ||||| || ||| Sbjct 119370 GCCAAGAGAAAGCACGACGAGAGCTGTGGACGAGGAGTGCCTGCGTTAAAGAGCGTCGGT 119311 Query 111028 GTCGCATG 111035 ||||| || Sbjct 119310 GTCGCGTG 119303 >seq216 Length=127927 Score = 118 bits (130), Expect = 1e-21 Identities = 351/535 (66%), Gaps = 31/535 (6%) Strand=Plus/Plus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||||| |||||||| ||||| || || | | ||| | ||||| ||||| |||| || Sbjct 117903 AATCTGCCGATCGAATCGACCAGGACGCAAGATAGCCTTGTCAAGGATATCAGCACGATT 117962 Query 11556 TGTAGCGGCAATGACTACAATGCC---AGTCTCATTGTCGAAACCGTCCATTTCTGTGAG 11612 |||| | || | || |||| || | || |||| || || |||||||| || Sbjct 117963 TGTACCAGCCAGCACCACAACACCTTCACTCGAATTG---AACCCATCCATTTCAACCAG 118019 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAAC---- 11668 ||||| || | ||| | |||||||||||||||| || |||| || Sbjct 118020 CAGCTGATTCAGCGTATTTTCACGCTCATCGTTG---------CCTCCTGAAAAATTTCC 118070 Query 11669 ---GCTTCTT--AC---CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTT 11720 ||||| | || | || || ||||| ||||| ||||| || || || || || Sbjct 118071 CTTGCTTCGTGAACGCGCCACGGCATCAATTTCATCAATGAAGACAATGCAAGGAGCATT 118130 Query 11721 GGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTC 11780 ||| || || | | |||||| ||||| ||||| | || ||||| |||||||| || Sbjct 118131 GGCCCGAGCTTCCTTGAAAAGGTCACGCACACGGGATGGACCTACACCGACGAACATTTC 118190 Query 11781 AACGAAGTTTGCGGCAGAAC-ACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTC 11839 || ||| | | | ||||| ||| || ||| || || | | || ||||| |||| Sbjct 118191 AATGAAATCCGAGCCAGAAATACTAAA-GAATGGTACGCTCGCTTCGCCAGCCGTGGCCT 118249 Query 11840 GAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCT 11899 || | || |||||||||||||| || | |||| | || || || || ||||||| Sbjct 118250 TCGCTAACAGCGTCTTACCCGTACCGGGCGGACCAACTAGCAGAGCACCCTTCGGGATCT 118309 Query 11900 TGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTT 11959 | |||||| | | |||||| | || | |||||||| | |||| || | Sbjct 118310 TTGCACCAAGATCTGTGAAGCGCTTTTGGTTTCGCAAAAAGTCCACGAACTCCATAATCT 118369 Query 11960 CCTCCTTGGCGGAGTCGATACCCTCAACATCGGTGAAACGAG-TCTCAACTTCTT 12013 | | |||||| || | |||| | ||||| | ||||||| ||| || |||| Sbjct 118370 CTTTCTTGGCTTCATCTACACCCGCCACATC-TTTAAACGAGATCTTAATGTCTT 118423 >seq8 Length=519435 Score = 89.7 bits (98), Expect = 6e-13 Identities = 120/166 (72%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 |||||||| | || || || ||||| | |||| |||||| || | || ||| | || Sbjct 329514 TTACCACGCAAAGGGAAGACTCCATAGTAGTCTCGACCCACTACTGCTAGGCCACCAACG 329573 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACA---CTTTCCAGACTGT 168546 || | ||||| || ||||| ||||| |||||||| | || || ||| || || Sbjct 329574 GCCACTGTTTTGGCCGAATCTCCCTCGGTCACGATTAAAGTGCAGTCCTTACC---CTTG 329630 Query 168547 GCCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGTGA 168592 ||||||||||| | || |||||||| | ||| |||||||| |||| Sbjct 329631 GCCGTACCAGCATGATTGGCATCGTCTAGTTTAGGGATACCTGTGA 329676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588962136977400