Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq55 163 6e-35 seq157 150 4e-31 seq593 136 9e-27 seq43 132 1e-25 >seq55 Length=263441 Score = 163 bits (180), Expect = 6e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || ||||| || || || ||||| ||||||||||| || || | ||| | ||||| Sbjct 150829 CAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCCGCCAAAGTCCGGCCATC 150888 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 |||||||||||| || || ||||| || || || ||||| || ||||| ||||| ||||| Sbjct 150889 TTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTGTC 150948 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||||| || ||||| || |||||| | ||||| ||||| || || |||| || Sbjct 150949 CTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATGGT 151008 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| || |||| || || ||||| | ||||||| Sbjct 151009 CTTGCCCGTCAGGGTCTTGACGAAAATCTGCATTT 151043 >seq157 Length=157498 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| ||||||||||| || |||||||| || || ||||| ||| ||||| | || || Sbjct 62782 CAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTC 62841 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || | |||||| || || || || || ||||| ||||| || ||||| ||||| ||||| Sbjct 62842 CTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTC 62901 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| || ||||| ||||| || || | ||| ||| || || ||||| || | || Sbjct 62902 CTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCAACGTCAAGAGTGATTGT 62961 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| |||||||| || ||||| | ||||| Sbjct 62962 CTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62994 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| ||||||||||| || |||||||| || || ||||| ||| | ||| | || || Sbjct 62098 CAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTACGTCCGTC 62157 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | |||||| || || || || || ||||| ||||| || ||||| ||||| ||||| Sbjct 62158 TTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTC 62217 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| || ||||| ||||| || || | ||| ||| || || || || || | || Sbjct 62218 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCTACATCGAGAGTTATAGT 62277 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| || || ||||| | ||||| Sbjct 62278 CTTCCCCGTCAACGTCTTGACGAAGATCTGCAT 62310 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| ||||||||||| || ||||| || || || ||||| || | ||| | || || Sbjct 62554 CAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCACTCAAAGTACGTCCGTC 62613 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || | |||||| || || ||||| || ||||| || || || ||||| ||||| ||||| Sbjct 62614 CTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGATCAGGGGGAATTCCTTCCTTGTC 62673 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| || ||||| ||||| || || | ||| ||| ||||| || || || | || Sbjct 62674 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCCACATCGAGAGTTATAGT 62733 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| |||||||| || ||||| | ||||| Sbjct 62734 CTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62766 >seq593 Length=12966 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 |||||||| ||||| || ||||| | | |||||||| || ||||| || || ||||| Sbjct 9110 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 9169 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | || || ||||| || ||||||||||| ||||| || ||||| ||||| || || ||| Sbjct 9170 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGTCA 9229 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||| |||| || |||||| || || |||| ||||| || ||||| ||||| || || Sbjct 9230 ATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTTTTGACAAAA 9289 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 9290 ATCTGCAT 9297 >seq43 Length=290853 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 |||||||| ||||| || ||||| | | |||||||| || ||||| || || ||||| Sbjct 97875 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 97934 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | || || ||||| || ||||||||||| ||||| || ||||| ||||| || || ||| Sbjct 97935 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGTCA 97994 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||| |||| || |||||| || || |||| ||||| || ||||| || || || || Sbjct 97995 ATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAAAA 98054 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 98055 ATCTGCAT 98062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109454832716261