Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq157 123 2e-23 seq55 104 2e-17 >seq157 Length=157498 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||||||||||||||||| | || | | || | || |||| ||| || |||||||| Sbjct 63032 TCTTTCTGAATGTTATAGTCGCTCAACG-TACGACCGTCCTCCAACTGCTTGCCGGCAAA 63090 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 ||||| ||||||||||| | || | || |||||||| ||||||||| || ||| Sbjct 63091 GATTAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTT 63150 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | ||||| || | ||||||||| | || || || |||||||| || ||||| || Sbjct 63151 GTCGATCGAGTCGGAAGGCTCAACATCAAGAGTGATTGTCTTTCCCGTCAGCGTCTTTAC 63210 Query 34970 AAAGATCTGCAT 34981 ||| |||||||| Sbjct 63211 AAAAATCTGCAT 63222 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | ||| | || |||| ||| || || ||||| Sbjct 62348 TCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAAG 62407 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||| ||||||||||| | || | || |||||||| ||||||||| || ||| Sbjct 62408 ATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTA 62467 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| ||| | ||| || |||| ||||| || |||||||| | |||||| || Sbjct 62468 TCGATCGAGTCAGAAGGCTCTACGTCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGACG 62527 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 62528 AAAATCTGCATA 62539 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 34751 ATTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC 34810 |||||| || | || | ||| || | ||||| || |||||||| ||||| ||||| Sbjct 62080 ATTTCCACCACGCAGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTC 62139 Query 34811 -CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTT 34869 | || | | ||| | || |||| ||| || || ||||| || || ||||||||||| Sbjct 62140 GCTCAAAG-TACGTCCGTCTTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAG 62198 Query 34870 GCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCT 34929 | || | || |||||||| ||||||||| || ||| | ||||| || | || Sbjct 62199 GGGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCT 62258 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||||| ||||| || || ||||| | ||||| || |||||||||||| Sbjct 62259 CTACATCGAGAGTTATAGTCTTCCCCGTCAACGTCTTGACGAAGATCTGCATA 62311 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || | ||| || | ||||| || |||||||| ||||| ||||| Sbjct 62768 CCTCCACGCAGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTC 62827 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || | || |||| ||| || || ||||| || || ||||||||||| | || Sbjct 62828 AGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGA 62887 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||||||| || ||| | ||||| ||| | |||||| Sbjct 62888 ATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCAACG 62947 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || || || |||||||| | |||||| || || ||||||||| Sbjct 62948 TCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATA 62995 >seq55 Length=263441 Score = 104 bits (114), Expect = 2e-17 Identities = 151/209 (72%), Gaps = 17/209 (8%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCA 34847 |||||||||||| || ||||||| |||| | || |||| || ||||| || || ||| Sbjct 150850 TTCTTTCTGAATATTGTAGTCCGCCAAAG--TCCGGCCATCTTCGAGCTGCTTGCCAGCA 150907 Query 34848 AATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC- 34906 || || || || |||||||| | || | ||| |||||||| ||| ||||||||||| Sbjct 150908 AAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTGTCCTGAATTTTCTGTTTGACA 150967 Query 34907 ----GGATGCTAT-CGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961 ||||||| ||| || ||| || || | || ||||| || ||||| || Sbjct 150968 TTGTCAATGCTATCCGA------GGGCTCCACGTCCAGCGTAATGGTCTTGCCCGTCAGG 151021 Query 34962 GTCTTCACAAAGATCTGCATATTCGTAGA 34990 ||||| || || |||||||| ||| |||| Sbjct 151022 GTCTTGACGAAAATCTGCATTTTC-TAGA 151049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324626149963224