Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-19 seq122 89.7 4e-12 >seq5 Length=567841 Score = 114 bits (126), Expect = 1e-19 Identities = 342/521 (66%), Gaps = 15/521 (3%) Strand=Plus/Plus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 || ||||| || ||||| |||| | ||||||||||||||||| || || |||||| | Sbjct 329958 TGCGTTGGCGTGTGGCAGAATGATCGCGTTGAAATTATTGCCAACGACCAGGGTAACCGT 330017 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || ||||| || ||||| |||| ||||| || || | | | |||||||||| || || Sbjct 330018 ACCACTCCGTCGTATGTGGCTTTTACGGACACGGAGCGTCTTATTGGTGATGCTGCCAAG 330077 Query 550145 TATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAG- 550203 |||| | || || | ||| || | ||||| || || || | ||||| | Sbjct 330078 AATCAGGTGGCTATGAACGCACACAACACGGTGTTTGACGCCAAGCGCCTCATTGGTCGC 330137 Query 550204 AAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAA 550263 ||||| | || || ||| ||||| || || ||||| ||||| ||| | | | | Sbjct 330138 AAGTTCT-CGGACCCGCTTGTCCAGGCTGACATTAAGCACTGGCCGTTCAA----GGTGA 330192 Query 550264 TGTTT----CTGG---AAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAAT 550316 || | |||| || || | | | | | | | | |||| || || | | Sbjct 330193 CGTCTGGCGCTGGCGACAAGCCGCAGA-TCATGGTGCAGTTCAAGGGCGAGTCGAAGACT 330251 Query 550317 TTTC-ACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375 || | ||| || |||| || || ||||| | || || ||| | || ||| Sbjct 330252 TTCCAACCCGAGGAAATCTCGTCCATGGTGCTGATTAAGATGCGCGAGGTGGCTGAAGCT 330311 Query 550376 TTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435 || |||| | || || | | | || || || || || || ||||| ||||| ||||| Sbjct 330312 TTCATTGGCAAGGAGGTGAAGAACGCTGTGATTACGGTGCCCGCATACTTTAACGACTCC 330371 Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495 || ||||| || || || || || || || ||||||||||| ||||| ||||| || Sbjct 330372 CAGCGTCAGGCGACCAAGGACGCCGGTGCCATCGCTGGACTTAACGTTCTCCGTATCATT 330431 Query 550496 AATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || || || || || ||||| |||| || || || || || Sbjct 330432 AACGAGCCGACGGCCGCTGCCATTGCCTACGGTCTGGACAA 330472 Score = 111 bits (122), Expect = 1e-18 Identities = 341/521 (65%), Gaps = 15/521 (3%) Strand=Plus/Minus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 || ||||| || ||||| |||| | ||||||||||||||||| || || |||||| | Sbjct 353224 TGCGTTGGCGTGTGGCAGAATGATCGCGTTGAAATTATTGCCAACGACCAGGGTAACCGT 353165 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || ||||| || ||||| |||| ||||| || || | | | |||||||||| || || Sbjct 353164 ACCACTCCGTCGTATGTGGCTTTTACGGACACGGAGCGTCTTATTGGTGATGCTGCCAAG 353105 Query 550145 TATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAG- 550203 |||| | || || | ||| || | ||||| || || || | ||||| | Sbjct 353104 AATCAGGTGGCTATGAACGCACACAACACGGTGTTTGACGCCAAGCGCCTCATTGGTCGC 353045 Query 550204 AAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAA 550263 ||||| | || || ||| ||||| || || ||||| ||||| ||| | | | | Sbjct 353044 AAGTTCT-CGGACCCGCTTGTCCAGGCTGACATTAAGCACTGGCCGTTCAA----GGTGA 352990 Query 550264 TGTTT----CTGG---AAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAAT 550316 || | |||| || || | | | | | | | | |||| || || | | Sbjct 352989 CGTCTGGCGCTGGCGACAAGCCGCAGA-TCATGGTGCAGTTCAAGGGCGAGTCGAAGACT 352931 Query 550317 TTTC-ACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375 || | ||| || |||| || || ||||| || || || ||| | || ||| Sbjct 352930 TTCCAACCCGAGGAAATCTCGTCCATGGTGTTGATTAAGATGCGCGAGGTGGCTGAGGCT 352871 Query 550376 TTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435 || |||| | || || | | | || || || || || || ||||| || || ||||| Sbjct 352870 TTCATTGGCAAGGAGGTGAAGAACGCTGTGATTACGGTGCCCGCATACTTCAACGACTCC 352811 Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495 || ||||| || || || || || || || ||||| ||||| ||||| ||||| || Sbjct 352810 CAGCGTCAGGCGACCAAGGACGCCGGTGCCATCGCTGGTCTTAACGTTCTCCGTATCATT 352751 Query 550496 AATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || || || || || ||||| |||| || || || || || Sbjct 352750 AACGAGCCGACGGCCGCTGCCATTGCCTACGGTCTGGACAA 352710 Score = 105 bits (116), Expect = 5e-17 Identities = 204/301 (68%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 552301 TAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTA 552360 ||||||| || || || || |||||| | || || | ||| ||| | ||||| | || | Sbjct 331093 TAGATGTGACACCGCTGTCCCTTGGTCTTGAGACCGCTGGTGGTGTCATGACGACGCTGA 331152 Query 552361 TCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATA 552420 | | | | || || || | || || || || | ||||| |||||| |||| | Sbjct 331153 TTGCTCGTAACACGACGGTGCCGACGAAGAAGTCGCAGACGTTTTCGACGTATGCAGACA 331212 Query 552421 ATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATA 552480 ||||| | | || ||||| | || |||||||| | | | ||| || || | Sbjct 331213 ATCAACCGGGCGTGCTGATTCAGGTATTCGAAGGAGAGCGCTCAATGACTCGCGACAACA 331272 Query 552481 ATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAA 552540 || || || | |||||| | || || ||||| || |||||||| || || |||| Sbjct 331273 ATTTGCTGGGCAAATTTAATCTCGATGGCATTCCGCCCATGCCTCGTGGCGTGCCTCAAA 331332 Query 552541 TTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAAT 552600 | || || || |||||||||||||||||||| || ||||| ||| | ||| ||| || | Sbjct 331333 TCGATGTAACGTTCGATATCGATGCCAATGGTATCTTGAACGTGTCGGCTGTTGAGAAGT 331392 Query 552601 C 552601 | Sbjct 331393 C 331393 Score = 105 bits (116), Expect = 5e-17 Identities = 204/301 (68%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 552301 TAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTA 552360 ||||||| || || || || |||||| | || || | ||| ||| | ||||| | || | Sbjct 352089 TAGATGTGACACCGCTGTCCCTTGGTCTTGAGACCGCTGGTGGTGTCATGACGACGCTGA 352030 Query 552361 TCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATA 552420 | | | | || || || | || || || || | ||||| |||||| |||| | Sbjct 352029 TTGCTCGTAACACGACGGTGCCGACGAAGAAGTCGCAGACGTTTTCGACGTATGCAGACA 351970 Query 552421 ATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATA 552480 ||||| | | || ||||| | || |||||||| | | | ||| || || | Sbjct 351969 ATCAACCGGGCGTGCTGATTCAGGTATTCGAAGGAGAGCGCTCAATGACTCGCGACAACA 351910 Query 552481 ATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAA 552540 || || || | |||||| | || || ||||| || |||||||| || || |||| Sbjct 351909 ATTTGCTGGGCAAATTTAATCTCGATGGCATTCCGCCCATGCCTCGTGGCGTGCCTCAAA 351850 Query 552541 TTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAAT 552600 | || || || |||||||||||||||||||| || ||||| ||| | ||| ||| || | Sbjct 351849 TCGATGTAACGTTCGATATCGATGCCAATGGTATCTTGAACGTGTCGGCTGTTGAGAAGT 351790 Query 552601 C 552601 | Sbjct 351789 C 351789 Score = 102 bits (112), Expect = 7e-16 Identities = 263/396 (66%), Gaps = 5/396 (1%) Strand=Plus/Minus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || || || || ||||||||||||||| | | || || || || ||| || || Sbjct 385475 AACCCGGACGAAGCGGTTGCCTATGGTGCCACTGTCCAGGCTGCGATCCTTAGCGGCCAC 385416 Query 552270 -ACTGAT--GAAAAACTACAAAATATTGTACTTG-TAGATGTTACTCCTCTATCTCTTGG 552325 ||| || ||||| || || | ||| |||| | || || || || || || | || Sbjct 385415 GACTCATCAGAAAAGCTGCAGGAC-TTGCTCTTGCTGGACGTGACGCCGCTGTCGTTGGG 385357 Query 552326 TTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTG 552385 | | || || | ||| ||| | ||||| | || || | | || || || | || Sbjct 385356 TCTTGAGACTGCTGGTGGTGTCATGACGACGCTGATTGCCCGCAACACGACCGTCCCGAC 385297 Query 552386 TAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAAT 552445 ||||| || | |||||| |||||| |||| |||||| | | || ||||| | Sbjct 385296 CAAAAAGTCGCAGACATTTTCAACGTATGCAGACAATCAACCGGGCGTGCTGATTCAGGT 385237 Query 552446 TTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGA 552505 || |||||||| | | | || || || || || || | |||||| | || Sbjct 385236 ATTCGAAGGAGAGCGGTCAATGACGCGCGACAACAACTTGCTGGGCAAATTTAATCTCGA 385177 Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 || ||||| || |||||||| || ||||| ||||| || || || ||||||||||| Sbjct 385176 TGGCATTCCGCCCATGCCTCGTGGCGTGCCGCAGATTGACGTGACGTTTGATATCGATGC 385117 Query 552566 CAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 |||||| || ||||| ||| | ||| ||| || || Sbjct 385116 CAATGGTATCTTGAACGTGTCGGCTGTTGAGAAGTC 385081 Score = 102 bits (112), Expect = 7e-16 Identities = 263/396 (66%), Gaps = 5/396 (1%) Strand=Plus/Minus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || || || || ||||||||||||||| | | || || || || ||| || || Sbjct 390264 AACCCGGACGAAGCGGTTGCCTATGGTGCCACTGTCCAGGCTGCGATCCTTAGCGGCCAC 390205 Query 552270 -ACTGAT--GAAAAACTACAAAATATTGTACTTG-TAGATGTTACTCCTCTATCTCTTGG 552325 ||| || ||||| || || | ||| |||| | || || || || || || | || Sbjct 390204 GACTCATCAGAAAAGCTGCAGGAC-TTGCTCTTGCTGGACGTGACGCCGCTGTCGTTGGG 390146 Query 552326 TTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTG 552385 | | || || | ||| ||| | ||||| | || || | | || || || | || Sbjct 390145 TCTTGAGACTGCTGGTGGTGTCATGACGACGCTGATTGCCCGCAACACGACCGTCCCGAC 390086 Query 552386 TAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAAT 552445 ||||| || | |||||| |||||| |||| |||||| | | || ||||| | Sbjct 390085 CAAAAAGTCGCAGACATTTTCAACGTATGCAGACAATCAACCGGGCGTGCTGATTCAGGT 390026 Query 552446 TTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGA 552505 || |||||||| | | | || || || || || || | |||||| | || Sbjct 390025 ATTCGAAGGAGAGCGGTCAATGACGCGCGACAACAACTTGCTGGGCAAATTTAATCTCGA 389966 Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 || ||||| || |||||||| || ||||| ||||| || || || ||||||||||| Sbjct 389965 TGGCATTCCGCCCATGCCTCGTGGCGTGCCGCAGATTGACGTGACGTTTGATATCGATGC 389906 Query 552566 CAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 |||||| || ||||| ||| | ||| ||| || || Sbjct 389905 CAATGGTATCTTGAACGTGTCGGCTGTTGAGAAGTC 389870 Score = 102 bits (112), Expect = 7e-16 Identities = 263/396 (66%), Gaps = 5/396 (1%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || || || || ||||||||||||||| | | || || || || ||| || || Sbjct 393018 AACCCGGACGAAGCGGTTGCCTATGGTGCCACTGTCCAGGCTGCGATCCTTAGCGGCCAC 393077 Query 552270 -ACTGAT--GAAAAACTACAAAATATTGTACTTG-TAGATGTTACTCCTCTATCTCTTGG 552325 ||| || ||||| || || | ||| |||| | || || || || || || | || Sbjct 393078 GACTCATCAGAAAAGCTGCAGGAC-TTGCTCTTGCTGGACGTGACGCCGCTGTCGTTGGG 393136 Query 552326 TTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTG 552385 | | || || | ||| ||| | ||||| | || || | | || || || | || Sbjct 393137 TCTTGAGACTGCTGGTGGTGTCATGACGACGCTGATTGCCCGCAACACGACCGTCCCGAC 393196 Query 552386 TAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAAT 552445 ||||| || | |||||| |||||| |||| |||||| | | || ||||| | Sbjct 393197 CAAAAAGTCGCAGACATTTTCAACGTATGCAGACAATCAACCGGGCGTGCTGATTCAGGT 393256 Query 552446 TTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGA 552505 || |||||||| | | | || || || || || || | |||||| | || Sbjct 393257 ATTCGAAGGAGAGCGGTCAATGACGCGCGACAACAACTTGCTGGGCAAATTTAATCTCGA 393316 Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 || ||||| || |||||||| || ||||| ||||| || || || ||||||||||| Sbjct 393317 TGGCATTCCGCCCATGCCTCGTGGCGTGCCGCAGATTGACGTGACGTTTGATATCGATGC 393376 Query 552566 CAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 |||||| || ||||| ||| | ||| ||| || || Sbjct 393377 CAATGGTATCTTGAACGTGTCGGCTGTTGAGAAGTC 393412 >seq122 Length=187928 Score = 89.7 bits (98), Expect = 4e-12 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 550328 CAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAA 550387 |||||| || ||||| | | ||| ||||| | || || || ||| |||| ||| Sbjct 39502 CAAATTGGCTCGATGGTGCTGACGAAGATGAAGGAGACGGCGGATGGTTTC-TTGGGCAA 39444 Query 550388 GAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGC 550446 | |||| | || || || || || ||||| || ||||| ||||| || |||||||| Sbjct 39443 GCCCATTACCCAAGCCGTGATCACGGTGCCAGCTTACTTTAACGACTCGCAGCGTCAAGC 39384 Query 550447 TACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTAC 550506 ||| || ||||| || |||||||| | | || || || || ||||| |||||||| Sbjct 39383 TACCAAGGATGCGGGCAAAATTGCTGGCTTGGACGTGCTACGCATCATCAACGAACCTAC 39324 Query 550507 TGCTGCTGCACTTGCATATGG 550527 || ||||| || || ||||| Sbjct 39323 AGCCGCTGCTCTGGCCTATGG 39303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029196418467670