Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1 100 3e-16 >seq1 Length=763219 Score = 100 bits (110), Expect = 3e-16 Identities = 277/413 (67%), Gaps = 14/413 (3%) Strand=Plus/Plus Query 37218 TCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCA 37277 || || |||||| ||| || ||||||||||| | || || | |||||| || | ||| Sbjct 607222 TCGTTTGAAAAGCTTAGACCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGGA-GCA 607280 Query 37278 AAA-GATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGT---GTACC 37333 || || ||||| || ||||| ||||||||||| ||||| || | ||| ||| | | Sbjct 607281 GAATGAGCCAGAGAAAAAAATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATA 607340 Query 37334 GAAAGTTGAACTATA-ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACAC 37392 | ||| || | | ||| | ||| || | ||| | || ||| | || | Sbjct 607341 GGAAGA-GACCCGTGGATCGCA---CCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGC 607396 Query 37393 ATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCT-TCACTATCTGTTATATAA 37451 | || || || || || || ||| || || || || | ||| | ||||| Sbjct 607397 AAGGGATAGTCTCGATAGCACGTAGTAGATGGTCCTTCTCAATCGCG-TCTTTAATATAC 607455 Query 37452 GTATCAATTAGTAAACTA-TACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACC 37510 || ||||| | || | | |||| ||| ||||| ||||| || || || || ||||| || Sbjct 607456 GTGTCAATCAA-AAGCGAGTACACTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCC 607514 Query 37511 ATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTC 37570 ||||| || | ||| || | | || || ||||| ||| || | |||| ||||| Sbjct 607515 GTAAAAGCAGCGAGCCTCTGGCACCTGCACTTCGTTGCTAAAATTCATGGCTAGATTTTC 607574 Query 37571 ATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAAT 37623 ||| || || || |||||||| ||||||||||| || |||| || || |||| Sbjct 607575 ATTCACAATGCCGTCACTAGCAGCAAAGAAAGCGAGCACATGCTTAATGAAAT 607627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592302858343320