Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq157 113 3e-20 seq55 107 1e-18 seq593 96.9 3e-15 seq43 91.5 1e-13 >seq157 Length=157498 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||||||| | || || || |||||| ||||| || || || | | Sbjct 62996 CCGCCACGCAGACGCAACACAAGGTGGAGGGTCGACTCTTTCTGAATGTTATAGTC-GCT 63054 Query 48600 AGACTT-CGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| |||| ||||||||||| |||||||| || || || || || || | ||| Sbjct 63055 CAACGTACGACCGTCCTCCAACTGCTTGCCGGCAAAGATTAGACGTTGCTGGTCAGGGGG 63114 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || || |||||||| |||||| || || || | | || || || | ||| || Sbjct 63115 AATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAAC 63174 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || | || || || |||||||||| || ||||||||||||||||| || Sbjct 63175 ATCAAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCATTGT 63225 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || || || ||| || || || ||||| ||| | | | || Sbjct 62549 AGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCACTCAAAGTACGT 62608 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || ||||| || || || || ||||| | ||||| || ||| Sbjct 62609 CCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGATCAGGGGGAATTCCTTCC 62668 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || || | | || || || | |||||| || | || Sbjct 62669 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCCACATCGAGAGTT 62728 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||||||||| || || ||||||||||| Sbjct 62729 ATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62766 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || || || |||||| || || ||||| || ||| | || Sbjct 62777 AGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGG 62836 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || ||||| || || || || || || | ||||| || ||| Sbjct 62837 CCGTCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCC 62896 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || || | | | || || || | ||| || || | || Sbjct 62897 TTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCAACGTCAAGAGTG 62956 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||||||||| || || ||||||||||| Sbjct 62957 ATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62994 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || || || ||| || || || ||||| || ||| | || Sbjct 62321 AGACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGT 62380 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || ||||| || || || || || || | |||| || ||| Sbjct 62381 CCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGGTCAGGTGGAATTCCTTCC 62440 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || || | | | || || || | ||| || || | || Sbjct 62441 TTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCTACGTCGAGAGTT 62500 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||||||||| || || ||||||||||| Sbjct 62501 ATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62538 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || || || |||||| || || ||||| || | | | || Sbjct 62093 AGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTACGT 62152 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || ||||| || || || || || || | ||||| || ||| Sbjct 62153 CCGTCTTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCC 62212 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || || | | || || || | ||| || || | || Sbjct 62213 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCTACATCGAGAGTT 62272 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||||| || || || || |||||||| Sbjct 62273 ATAGTCTTCCCCGTCAACGTCTTGACGAAGATCTGCAT 62310 >seq55 Length=263441 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||||||| | || ||||| ||||| ||||||||||| || | Sbjct 150815 CCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCCGCC 150874 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || || | |||||| || ||||| ||||| ||||| || || | ||| Sbjct 150875 AAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGA 150934 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| || ||||| ||| | | || || | |||||| Sbjct 150935 ATCCCTTCCTTGTCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACG 150994 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| |||||| || || ||||||| || || || ||||||||||| Sbjct 150995 TCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 151041 >seq593 Length=12966 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 |||||||| ||||| || | || || | || || | ||||| || ||||| ||| Sbjct 9110 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 9169 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698 | ||||| || || | |||| ||| |||||||| || || || |||||| | Sbjct 9170 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGTCA 9229 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 | ||||||| ||||| |||| |||||| || || |||||||| ||||| |||||| Sbjct 9230 ATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTTTTGACAAAA 9289 Query 48759 ATCTGCAT 48766 |||||||| Sbjct 9290 ATCTGCAT 9297 >seq43 Length=290853 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 |||||||| ||||| || | || || | || || | ||||| || ||||| ||| Sbjct 97875 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 97934 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698 | ||||| || || | |||| ||| |||||||| || || || |||||| | Sbjct 97935 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGTCA 97994 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 | ||||||| ||||| |||| |||||| || || |||||||| || || |||||| Sbjct 97995 ATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAAAA 98054 Query 48759 ATCTGCAT 48766 |||||||| Sbjct 98055 ATCTGCAT 98062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380928857839209