Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 163 5e-35 seq4 114 2e-20 >seq1 Length=763219 Score = 163 bits (180), Expect = 5e-35 Identities = 372/553 (67%), Gaps = 14/553 (3%) Strand=Plus/Plus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| ||||||||| |||||| || ||||||||||| || ||| |||| || |||| || Sbjct 607179 GCACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAG 607238 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 ||||||||| | || | || |||||||| || || | ||| ||||||||||| || Sbjct 607239 ACCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGAAAAA 607298 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTG 48308 ||||| || ||||| || || || |||| ||| | |||| | | || | Sbjct 607299 AATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGAT- 607357 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 | ||| || ||||||| || || || ||| ||| || || ||||| || || | Sbjct 607358 CGCACCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCAC 607417 Query 48369 G--GAAGA-GCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTG 48422 | | ||| | | ||| |||| ||||| || ||| || | | | ||| | Sbjct 607418 GTAGTAGATGGTCCTT---CTCAATCGCGTCTTTAATATACGTGTCAATCAAAAGC---G 607471 Query 48423 CGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCT 48482 ||||| || ||||| | |||||| || ||||| || |||||||| ||| | |||| Sbjct 607472 AGTACACTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCT 607531 Query 48483 CAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTG 48542 | |||||||||||| || || || ||||| ||||| || || || || Sbjct 607532 CTGGCACCTGCACTTCGTTGCTAAAATTCATGGCTAGATTTTCATTCACAATGCCGTCAC 607591 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT 48602 |||||||||||| || || ||||| |||| ||||| |||||||||| ||||| | Sbjct 607592 TAGCAGCAAAGAAAGCGAGCACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAG 607651 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 ||| | | | || | |||| || | ||| || | ||||| || || || | Sbjct 607652 CCCAATCTTTCAGATCGTGCACCAGATCGAGTTCCTCAGCTGTCCAAAAAGAAGCTTCAG 607711 Query 48663 CTTTTTTGTACAT 48675 |||| |||||||| Sbjct 607712 CTTTCTTGTACAT 607724 >seq4 Length=584709 Score = 114 bits (126), Expect = 2e-20 Identities = 238/348 (68%), Gaps = 10/348 (3%) Strand=Plus/Minus Query 213301 CATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGAC-TTGGAG 213359 ||||||||| ||||| || || ||||||| || | ||| | || || ||| || | | Sbjct 120233 CATCAGCCAATCCCTGCACGCCAATGCCGACCGGGCGGTGGCGCATATTGGACGTTTGGG 120174 Query 213360 CACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACT 213419 | || || || || ||||| ||| |||| |||||| | |||||| || ||||| Sbjct 120173 CT-TCTGGCACTGGATAGTAGTTGACGTCAATGACCTTGTTTAAGTTGCGCGTCACCACT 120115 Query 213420 TTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCA 213479 ||| || | | || | | || | | || || ||||||| |||||||||| Sbjct 120114 TTGACCACGTCGTAGAGTTTCCGGT-AGTCAA-----AGACCCCGTCTTGCACAAACTTG 120061 Query 213480 GGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATG 213539 |||| ||| | |||| |||||| |||||||| || | || || || ||||| Sbjct 120060 GGCAAGGCCACCGACGCCAAGTTGCACACGGCCACTTCGTCCGAAGACGTATATTCCATC 120001 Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599 | || ||||| || || ||||||| ||||| ||||| || ||||| || |||||| Sbjct 120000 ACTTCACAGCACAAATTACTCGATCGGATCGTGCCAAGGTTTTGCTGGTTCGA-TTTGCG 119942 Query 213600 -TTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 || || | || || ||||||||||| ||| || ||||| | ||| Sbjct 119941 GTTCGCGGCGTCTTTATAGAGCATGTAAGGGACGCCCGTCTCAATCTG 119894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931510874046720