Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 140 6e-28 >seq1 Length=763219 Score = 140 bits (154), Expect = 6e-28 Identities = 373/563 (66%), Gaps = 18/563 (3%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| ||||||||||||| ||| || || ||||| || || || | ||||||| Sbjct 607730 TGGCAGATGTACAAGAAAGCTGAAGCTTCTTTTTGGACAGCTGAGGAACTCGATCTGGTG 607671 Query 25540 AAGGACATGGACGGCTGG--TACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACG 25597 | || || | | ||| || ||| | | |||||| |||| | ||| | | Sbjct 607670 CACGATCTGAAAGATTGGGCTAGCCTCA--CGGACAACGAGCGTTATTTCATTAAGCATG 607613 Query 25598 TGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCA 25657 || | || |||||||| || ||| || || ||||| || ||||| | || || | Sbjct 607612 TGCTCGCTTTCTTTGCTGCTAGTGACGGCATTGTGAATGAAAATCTAGCCATGAATTTTA 607553 Query 25658 CCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 || ||||||||| ||| ||||| || || ||||| || || || || |||| Sbjct 607552 GCAACGAAGTGCAG---GTGCCAGAGGCTCGCTGCTTTTACGGGTTTCAAATCGCAATCG 607496 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCG 25771 | ||| | ||||| || ||||| | |||| |||| ||||| |||| ||||| Sbjct 607495 AGAATATACACTCGGAAGTGTACTC---GCTTTTGATTGACACGTATATTAAAGACGCGA 607439 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 |||| || | || | |||| |||||| || || || ||| | || |||| Sbjct 607438 TTGAGAAGGACCATCTACTACGTGCTATCGAGACTATCCCTTGCGTCACCAAAAAAGCGC 607379 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||| |||||||| | | | | | || | | | || ||||| | |||| Sbjct 607378 ACTGGGCTCTGAAGTGGTGCGATCCACGGGTCTCTTCCTATCCAGAACGGCTTTTGGCCT 607319 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 ||||||| || || ||||| |||||| || || || ||| ||||||| ||||||||| Sbjct 607318 TTGCTGCAGTTGAAGGCATTTTTTTCTCTGGCTCATTCTGCT-CCATCTTTTGGCTCAAG 607260 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || ||||| || || |||||| |||||||| || ||| ||||||||||| Sbjct 607259 AAGCGCGGTTTAATGCCTGGTCTAAGCTTTTCAAACGAGCTTATTAGCCGGGACGAGGGT 607200 Query 26011 CTCCACAGAGATTTTGCCTGCCT 26033 | |||| || ||||| ||||| Sbjct 607199 ATGCACACGGACTTTGCGTGCCT 607177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928822937315520