Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq55 111 1e-18 seq157 96.9 2e-14 >seq55 Length=263441 Score = 111 bits (122), Expect = 1e-18 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| | || || || || || |||||| || ||| || || || | ||| Sbjct 150820 ACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCCGCCAAAGT 150879 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || ||||| |||||||| || ||||| || || || || ||||| || Sbjct 150880 CCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCC 150939 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| ||||| || ||||||||| ||||| |||| | | | || || Sbjct 150940 TTCCTTGTCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACGTCCAG 150999 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || || ||||| |||||||| || Sbjct 151000 CGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTG 151038 >seq157 Length=157498 Score = 96.9 bits (106), Expect = 2e-14 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| ||||||||||| |||||||| || ||||| ||||||||||||||||| |||||| Sbjct 62849 TGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATC 62908 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCG 480746 || || || || || || | |||| | | ||||| || || || || || Sbjct 62909 TTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCAACGTCAAGAGTGATTGTCTTTCCC 62968 Query 480747 GTGAGAGTCTTAACGAAAATTTG 480769 || | |||||| |||||||| || Sbjct 62969 GTCAAAGTCTTGACGAAAATCTG 62991 Score = 91.5 bits (100), Expect = 1e-12 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| | ||||| ||||||||||| |||||||| || ||||| ||||||||||||||| Sbjct 62156 TCTTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTG 62215 Query 480678 TCTTGAATCTTTTGTTTGAC 480697 || |||||||| || || || Sbjct 62216 TCCTGAATCTTCTGCTTCAC 62235 Score = 87.8 bits (96), Expect = 1e-11 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| |||||||| || |||||||| |||||||| ||||||||||||||||| |||||| Sbjct 62621 TGCTTGCCAGCAAAGATTAGACGTTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGAATC 62680 Query 480687 TTTTGTTTGAC 480697 || || || || Sbjct 62681 TTCTGCTTCAC 62691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268098428993684