Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 5e-16 >seq4 Length=584709 Score = 98.7 bits (108), Expect = 5e-16 Identities = 283/432 (66%), Gaps = 10/432 (2%) Strand=Plus/Minus Query 25930 CTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTC 25989 || |||||| | ||| || | ||||| ||| |||| ||||| | || | || Sbjct 119725 CTTCATAAAGAGATCCGGGACCCACAAGGCAAAAAACAAATCCCGAGCACGATGCAACTC 119666 Query 25990 TTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAA 26049 || ||||| || || | |||| || ||||| | ||| | |||||| || |||| Sbjct 119665 GTTGCCGTGGTTTTTCCGCAACTCTAGAAACTCAAACACATCGGCGTGCCAGGGCTCTAG 119606 Query 26050 ATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTC 26109 |||||| ||||| ||||| | || || ||||||||||| ||||| | || || || Sbjct 119605 ATAGATGGCAAACGAGCCTTTGCGCTTCCCACCACCTTGATCAACGTACCGCGCCGTGTC 119546 Query 26110 ATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTT 26169 |||||| || ||||||||||| | ||| | || | ||||| |||| | || | Sbjct 119545 ATTGAAGACGCGCAACATTGGAATGATGCCATTCGACGACCCGTTCGTGCCTCGGATGTA 119486 Query 26170 GGATCCTGTCGAT----CTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTG 26225 | |||| | | | ||| | ||| | || ||||| || || |||||||| | Sbjct 119485 G----CTGTTGGTGGCACGAATGTTGTGCATACTGATCCCGATCCCGCCGGCCCATTTCG 119430 Query 26226 AAATAGCTGCACAAT-CTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATT 26284 |||| ||||| | || | | || || |||| |||| || ||| ||| ||| Sbjct 119429 AAATGCACGCACATTGCTTGAGC-GTGTCATAAATGCCTTCAATCGAGTCATCTTGCATG 119371 Query 26285 CCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGT 26344 | || | ||| || || || | || | | ||| || |||| ||||| | |||||| Sbjct 119370 GCCAAGAGAAAGCACGACGAGAGCTGTGGACGAGGAGTGCCTGCGTTAAAGAGCGTCGGT 119311 Query 26345 GTAGCATGAGTA 26356 || || || ||| Sbjct 119310 GTCGCGTGGGTA 119299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253034192969225