Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq157 87.8 3e-12 seq55 84.2 4e-11 >seq157 Length=157498 Score = 87.8 bits (96), Expect = 3e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 171909 CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCT 171968 ||| |||| ||||| || || |||||||| |||| | || ||||||||||| |||||| Sbjct 62378 CGTCCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGGTCAGGTGGAATTCCT 62437 Query 171969 TCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGA 172028 || || || || || || | || || ||| || | || || | ||||| || ||| Sbjct 62438 TCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCTACGTCGAGA 62497 Query 172029 GTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || || || | ||| |||||||| Sbjct 62498 GTTATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62538 >seq55 Length=263441 Score = 84.2 bits (92), Expect = 4e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938 ||||| |||||| || || | |||| || | || || | || || |||||||| Sbjct 150851 TCTTTCTGAATATTGTAGTCCGCCAAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAG 150910 Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998 || | | ||| ||||| ||||| || ||||| || || || ||||| | ||| ||||| Sbjct 150911 ATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTGTCCTGAATTTTCTGTTTGACATTG 150970 Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058 || |||| || | || || || || |||||||| || || || | || || | | Sbjct 150971 TCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACG 151030 Query 172059 AATATCTGCATTTT 172072 || ||||||||||| Sbjct 151031 AAAATCTGCATTTT 151044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905114695361400