Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq422 140 1e-27 >seq422 Length=40671 Score = 140 bits (154), Expect = 1e-27 Identities = 265/382 (69%), Gaps = 16/382 (4%) Strand=Plus/Minus Query 302491 TCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTT-ATTTCTTACGGT 302549 || || ||||| || || || || | ||||| |||| | ||||| ||| | || || Sbjct 15809 TCCATCCCGTCTTCACCATACAAAAATTGAATAATTTCGC-CTTGTGCATTACGGACAGT 15751 Query 302550 CATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACC 302609 ||| || | | |||||| |||||| ||| | | |||||||| |||||||| Sbjct 15750 GCCATCGTATCGAGTCATAACTGATTCCATCGCCTTAACAAGTCGACGCTGGATATAACC 15691 Query 302610 AGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAA 302669 ||| | ||| || || ||||||||||| ||||| ||||||||||||| || ||||| Sbjct 15690 AGTCTCGGCTGTCTTCACGGCTGTATCAATCAGACCTTCACGACCACCCATCGCGTGGAA 15631 Query 302670 GAATAGCTCTTCCGGTCGTAGCCCC--CCAATAAAGGAGCTCTCAACGAAACCACGCGCC 302727 || | ||||| ||| || ||| | ||||| || | || || ||||| || Sbjct 15630 AAAAAACTCTTGTGGTGTTAAACCCTTCAAATAA--GAATTTTCCACAAAACCGCGACTT 15573 Query 302728 TCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTAT 302784 || || |||| || ||| | |||| ||||| || | || | | | ||||| Sbjct 15572 TCAGGACCTAAATCATC---TTTGCCATAGTGCGGCAGCGTACGGTGATTAAAACCGTAA 15516 Query 302785 GGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT- 302843 || ||||| || || ||||| ||||| || |||| ||| | || |||||||||||||| Sbjct 15515 GGAATACGTTTACCTTCAACATTCTGTTGACCCACGCAAGCGATGATCTGCGAAATATTG 15456 Query 302844 -TAAATCACTGCCCTTGGAGCC 302864 ||||| | |||||||||||| Sbjct 15455 ATAAATGA--GCCCTTGGAGCC 15436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471782091020571