Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq122 168 8e-36 seq502 165 1e-34 seq4 159 4e-33 seq1 131 2e-24 >seq122 Length=187928 Score = 168 bits (186), Expect = 8e-36 Identities = 330/485 (68%), Gaps = 2/485 (0%) Strand=Plus/Plus Query 1573766 CGACTTTGGCCTCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGG 1573825 |||||||| |||||| |||||||||| ||||| | ||| ||| | || || Sbjct 7605 CGACTTTGAGGCGCCGTGGGTCGAAAAGTACCGCCCGCGCCTTCTCTCGGACGTCGTGGG 7664 Query 1573826 CAACGAGCACGCCGTCGCCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCT 1573885 |||| || | | ||| |||| ||| |||| | ||| ||||| | || | Sbjct 7665 CAACCGTGACACTATGGCCAGTCTCCAAGCCATGGCACGGGCCGGTAACATGACGAATTT 7724 Query 1573886 CTTGCTGGCGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGT 1573945 | || | ||||| |||||||| |||||||| |||||||| |||||| ||||| | Sbjct 7725 AATCCTCTCTGGTCCTCCCGGCACTGGCAAGACGACGAGCATTTTGTGTCTCGCGCGCGA 7784 Query 1573946 CCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGG 1574005 | | || || || | | | || ||||||||||| ||||| |||||||| || || Sbjct 7785 GTTGCTCGGTCCGAGCGTCAAGCAAGCAGTGCTCGAACTGAACGCATCGGACGATCGTGG 7844 Query 1574006 CGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGAC-CTGCCGC 1574064 ||||| ||||| | || |||||| || ||| | | ||| || || | Sbjct 7845 TATCGACACGGTGCGGACGAAGATCAAGATGTTTGCGCAGCAGAAGGT-GACGCTTCCTC 7903 Query 1574065 CCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGC 1574124 |||| ||||||||| | |||| |||||||| ||||||| | || | |||||||||| Sbjct 7904 CCGGCCGCCACAAGCTCGTCATTCTCGACGAAGCCGACTCGATGACTGCTGCGGCCCAGC 7963 Query 1574125 AGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCA 1574184 |||| |||| ||| ||||| | | ||| ||||||||||| |||| |||| Sbjct 7964 AGGCTTTGCGTCGCACGATGGAGATCTTTTCAGCCACCACGCGCTTTGCATTGGCTTGCA 8023 Query 1574185 ACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTGC 1574244 ||| ||| | | | | || ||| || |||| ||||| ||||| ||| | |||||| || Sbjct 8024 ACAACTCGACCAAGATTATTGAGCCCATCCAGAGTCGGTGCGCGATTTTACGCTTTACGC 8083 Query 1574245 GCCTG 1574249 | ||| Sbjct 8084 GGCTG 8088 >seq502 Length=24025 Score = 165 bits (182), Expect = 1e-34 Identities = 323/475 (68%), Gaps = 2/475 (0%) Strand=Plus/Plus Query 1573766 CGACTTTGGCCTCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGG 1573825 |||||||| |||||| |||||||||| ||||| | ||| ||| | || || Sbjct 16447 CGACTTTGAGGCGCCGTGGGTCGAAAAGTACCGCCCGCGCCTTCTCTCGGACGTCGTGGG 16506 Query 1573826 CAACGAGCACGCCGTCGCCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCT 1573885 |||| || | | || |||| ||| |||| | ||| ||||| | || | Sbjct 16507 CAACCGTGACACTATGGCTAGTCTCCAAGCCATGGCACAGGCCGGTAACATGACGAATTT 16566 Query 1573886 CTTGCTGGCGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGT 1573945 | || | ||||| |||||||| |||||||| |||||||| |||||| ||||| | Sbjct 16567 AATCCTCTCTGGTCCTCCCGGCACTGGCAAGACGACGAGCATTTTGTGTCTCGCGCGCGA 16626 Query 1573946 CCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGG 1574005 | | || || || | | | || ||||||||||| ||||| |||||||| || || Sbjct 16627 GTTGCTCGGTCCGAGCGTCAAGCAAGCAGTGCTCGAACTGAACGCATCGGACGATCGTGG 16686 Query 1574006 CGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGAC-CTGCCGC 1574064 ||||| ||||| | || |||||| || ||| | | ||| || || | Sbjct 16687 TATCGACACGGTGCGGACGAAGATCAAGATGTTTGCGCAACAGAAGGT-GACGCTTCCTC 16745 Query 1574065 CCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGC 1574124 |||| ||||||||| | |||| |||||||| ||||||| | || | |||||||||| Sbjct 16746 CCGGCCGCCACAAGCTCGTCATTCTCGACGAAGCCGACTCGATGACTGCTGCGGCCCAGC 16805 Query 1574125 AGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCA 1574184 |||| |||| ||| ||||| | | ||| ||||||||||| |||| |||| Sbjct 16806 AGGCTTTGCGTCGCACGATGGAGATCTTTTCAGCCACCACGCGCTTTGCATTGGCTTGCA 16865 Query 1574185 ACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTT 1574239 ||| ||| | | | |||| ||| || |||| ||||| ||||| ||| | ||||| Sbjct 16866 ACAACTCGACCAAGATCATTGAGCCCATCCAGAGTCGGTGCGCGATTTTACGCTT 16920 >seq4 Length=584709 Score = 159 bits (176), Expect = 4e-33 Identities = 208/288 (72%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || || ||||| ||||||||||| || |||||||| | ||| || | || ||| || ||| Sbjct 119568 TGATCAACGTACCGCGCCGTGTCATTGAAGACGCGCAACATTGGAATGATGCCATTCGAC 119509 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||||| ||||| | |||| | || ||| || | |||||| | ||| Sbjct 119508 GACCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCACGAATGTTGTGCATACTGATCCCG 119449 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || ||||||||| | || || ||| ||| || || ||||||||||| || ||||| || Sbjct 119448 ATCCCGCCGGCCCATTTCGAAATGCACGCACATTGCTTGAGCGTGTCATAAATGCCTTCA 119389 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 |||||||| | | |||| ||| |||||||||||||||| || || | | ||||| Sbjct 119388 ATCGAGTCATCTTGCATGGCCAAGAGAAAGCACGACGAGAGCTGTGGACGAGGAGTGCCT 119329 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATG 1630353 ||||| |||||||| || ||||| ||| || || | | |||||||| Sbjct 119328 GCGTTAAAGAGCGTCGGTGTCGCGTGGGTAAAGAATTTCTGCGACATG 119281 >seq1 Length=763219 Score = 131 bits (144), Expect = 2e-24 Identities = 225/323 (70%), Gaps = 9/323 (3%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 || || | ||| || || ||||| ||| |||||||| |||||||||| ||| |||||| Sbjct 606886 GCTTTCGAGTATTCTCCAACGCGTTTCTCAAAAAAGTTCGTCTTGCCCTGGAGAGAGATC 606945 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | |||||||| ||| ||||| | | |||| ||| ||| ||||| Sbjct 606946 ATGTCCATCCAATCGAATGGGTTCTTTGCATGGTAGATCTTGGATACTCCCAGCGAGTAA 607005 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| || || || ||||| || |||||| ||||||||||||| | ||||||||| || Sbjct 607006 AGCAGACGATCAGCCACAAATTCAATGTACAGGCACATGAGGCCCGAGTTCATGCCAATC 607065 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| | ||||| ||||| || | ||| ||||| | || ||| | || || ||| ||| Sbjct 607066 AGCTCGACCGGGAGCGAGTCACGCACGAACTCGTGTTCAATCGCCACAGCATCGCGAATG 607125 Query 868931 ATCTGCCTGGGCACGTCGG----CCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCA 868986 || | | ||||| ||| | | ||||| |||| | | | ||| | ||||| Sbjct 607126 ATTT---CGTGCACG-CGGTATTCTGGCAGCTTGGTGACCAATTTGGAGTACAAAAGGCA 607181 Query 868987 GGCAAAGTCGCAGTGCA-ACCCT 869008 |||||||| ||||| ||||| Sbjct 607182 CGCAAAGTCCGTGTGCATACCCT 607204 Score = 123 bits (136), Expect = 3e-22 Identities = 198/283 (70%), Gaps = 11/283 (4%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || || || | ||||| |||| || || ||||| | |||||||| Sbjct 607200 ACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGACCAGGCATTAAACCGCGCTT 607259 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||||||||||| |||||| ||| |||||||| ||||| || || || ||||| Sbjct 607260 CTTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGAAAAAAATGCCTTCAACTGCAGCAAA 607319 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGAT----CCACTTCATCG 869354 | | | ||||| || | | || | ||| ||| || ||| |||||||| | Sbjct 607320 GGCCAAAAGCCGTTCTGGATAG--GAAGAGACCC-----GTGGATCGCACCACTTCAGAG 607372 Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 869414 |||||| || ||||| | || | || | || ||||| || || | || ||||||| Sbjct 607373 CCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCACGTAGTAGATGGTCCT 607432 Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 | || || ||| || | ||| ||||| |||| ||||| || Sbjct 607433 TCTCAATCGCGTCTTTAATATACGTGTCAATCAAAAGCGAGTA 607475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106984672201911