Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq157 125 6e-24 seq4 116 3e-21 seq593 98.7 9e-16 seq43 95.1 1e-14 >seq157 Length=157498 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 24697 TGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGA 24756 |||||| |||||||| ||| | || ||||| || || || || || || || || || || Sbjct 63229 TGATACAATGCAGATTTTTGTAAAGACGCTGACGGGAAAGACAATCACTCTTGATGTTGA 63170 Query 24757 AGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCC 24816 | ||||| | | || | || || || ||||| || ||||| |||||||| || || Sbjct 63169 GCCTTCCGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCC 63110 Query 24817 CGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGA 24876 || || |||||| | ||||||||||| || ||| ||||||| | | || || Sbjct 63109 TGACCAGCAACGTCTAATCTTTGCCGGCAAGCAGTTGGAGGACGGTCGTACGTTGAGCGA 63050 Query 24877 TTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || ||||| || ||| | |||||||| |||| || || Sbjct 63049 CTATAACATTCAGAAAGAGTCGACCCTCCACCTTGTGTTGCGTCTGCGTGGCGG 62996 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || ||||| || ||||| ||||| | || Sbjct 62310 ATGCAGATCTTCGTCAAGACGTTGACGGGGAAGACTATAACTCTCGATGTAGAGCCTTCC 62251 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| || ||||| |||||||| || || || || Sbjct 62250 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCAG 62191 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || ||||| || || ||| |||| || | | || || || ||| Sbjct 62190 CAACGTCTCATTTTTGCTGGCAAGCAGTTGGAAGACGGACGTACTTTGAGCGACTACAAC 62131 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || ||||| || ||| | |||||||| |||| || || Sbjct 62130 ATCCAGAAAGAGTCGACCCTTCACCTTGTGTTGCGCCTGCGTGGTGG 62084 >seq4 Length=584709 Score = 116 bits (128), Expect = 3e-21 Identities = 326/489 (67%), Gaps = 20/489 (4%) Strand=Plus/Minus Query 138202 TAATACATTCCCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAAC 138261 || ||||| ||||| || | ||| |||| ||| ||||| | ||| || || |||||| Sbjct 120918 TAGTACATGCCCGTCTTGAGCCCTTTTTTCCACGCGTAAAAGTGCATGGACGTGAGTTT- 120860 Query 138262 GCGTAA--GTCGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGC 138319 || ||| ||||| | ||| | ||||| ||||||||||||||| || || |||| Sbjct 120859 GC-TAATCGTCGGGTCCGCAATGTGAATGTTCAACGATTGACTCTGACAAATAAACGCGC 120801 Query 138320 CTCGATCAATGGCCATGTTAATTAAAT--TTTTACTTTTCATCTCCCACACGGTCTTGTA 138377 | ||||| || || | | | |||| ||| ||||||||||| |||||||| Sbjct 120800 CACGATCCGCGGACAGATCGAGCACGGCCTTTTGCTTG--ATCTCCCACACTGTCTTGTA 120743 Query 138378 ----TAGATCACGAATATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCG 138433 | ||||| || | || || || | || ||||| | | ||| | | Sbjct 120742 CTTTTCTTTCACGGC-ATCTGGCAGTGC-GTGG--ATCTTTTGCACGGACCCACCGTCGT 120687 Query 138434 CAATGATGCGATTTCTCATGTCATCGTTGTACAGATTC--AACTTGATCAAGTCGTTTAT 138491 | || |||| | || | | || ||||| | || | |||| || || || Sbjct 120686 TCAGAATCTGATTCCGCACTTGG--GGCGTCCAGATGCCCAATTCAATCAGCTCTTTCAT 120629 Query 138492 CAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTT 138551 |||||| |||||| || | ||| || || ||||| || || ||| ||| |||||| Sbjct 120628 CAGATACTTGTTTACGATCGTAAACTCGCCAGCCAAGACGCGGCGATTGTACATGTTGGA 120569 Query 138552 GGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCAT 138611 || || ||||||| |||||||||||| |||| || ||||| || | ||| || ||||| Sbjct 120568 CGTAAAGGGCTCAATCGATTCGTTGTTGCCCAAGATTTGAGCGGTCGACGCCGTGGGCAT 120509 Query 138612 GTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGA 138671 | ||| ||||| || || ||||| | || || || ||| |||||| || | || Sbjct 120508 GGGCGCGACCAAGAGCGAGTTCCGGAGCCCATGCTGCATGACCTTTTCCTTCAGTGCCGC 120449 Query 138672 CCAGTCCCA 138680 ||| ||||| Sbjct 120448 CCAATCCCA 120440 Score = 114 bits (126), Expect = 1e-20 Identities = 320/483 (66%), Gaps = 15/483 (3%) Strand=Plus/Minus Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC 139448 ||| || || | |||||| |||| || |||||||| | |||||| || || | |||||| Sbjct 119743 GCCATTGGCTTCCACGCGCTTCATAAAGAGATCCGGGACCCACAAGGCAAAAAACAAATC 119684 Query 139449 GCGCGCCTTCTT-ATCTTCCGAACCCATGTTACGTTTC---ATGTTAAGGAAATCAAAAA 139504 || || | | || || || || | |||| | | || || ||||| | Sbjct 119683 CCGAGCACGATGCAACT--CGTTGCCGTGGTT--TTTCCGCAACTCTAGAAACTCAAACA 119628 Query 139505 CGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACC---TT 139561 | || |||||||| || || ||||||||||| | | |||||| || || ||||| || Sbjct 119627 CATCGGCGTGCCAGGGCTCTAGATAGATGGCAAACGAGCCTTTGCGCTTCCCACCACCTT 119568 Query 139562 GATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTG 139621 |||| |||| || | | | |||||| ||||||||||| || | || ||| | Sbjct 119567 GATCAACGTACCGCGCCGTGTCATTGAAGACGCGCAACATTGGAATGATGCCATTCGACG 119508 Query 139622 TTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGA 139681 ||||| |||| |||||| |||||| || || | || || | | |||| |||| Sbjct 119507 ACCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCACGAATGTTGTGCATACTGATCCCGA 119448 Query 139682 TTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGT-AATGTCTCGTATATACCTCT 139739 | |||||| | |||| || || ||||| || || | | || || || || ||| Sbjct 119447 TCCCGCCGGCCCATTTCGAAAT--GCACGCACATTGCTTGAGCGTGTCATAAATGCCTTC 119390 Query 139740 TATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCC 139799 || ||| || ||||| | | |||||||| ||||| || || || | ||||| Sbjct 119389 AATCGAGTCATCTTGCATGGCCAAGAGAAAGCACGACGAGAGCTGTGGACGAGGAGTGCC 119330 Query 139800 GGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGT 139859 || ||| || || || ||||||| || || | || | |||||| | || ||||| Sbjct 119329 TGCGTTAAAGAGCGTCGGTGTCGCGTGGGTAAAGAATTTCTGCGACATGAGCTCATACGT 119270 Query 139860 TTC 139862 || Sbjct 119269 CTC 119267 >seq593 Length=12966 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | |||||| | || || || || |||||||| || || ||| | | Sbjct 9297 ATGCAGATTTTTGTCAAAACGTTGACGGGCAAGACCATTACGCTGGACGTGGAACCGTCA 9238 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | ||||| || || ||||| ||||| ||||| || || || || || Sbjct 9237 GACAGCATTGACAATGTAAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 9178 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT-TCGAGAAACATGTCAGATTATAA 24882 || |||||||||||||| || || || || || ||| | || || | || || || Sbjct 9177 CAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTTCACTTG-CGGACTACAA 9119 Query 24883 CATTCAAAAGG 24893 ||||||||||| Sbjct 9118 CATTCAAAAGG 9108 >seq43 Length=290853 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || ||| | || || || || |||||||| || || ||| | | Sbjct 98062 ATGCAGATTTTTGTCAAGACGTTGACGGGCAAGACCATTACGCTGGACGTGGAACCGTCA 98003 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | ||||| || || ||||| ||||| ||||| || || || || || Sbjct 98002 GACAGCATTGACAATGTAAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 97943 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT-TCGAGAAACATGTCAGATTATAA 24882 || |||||||||||||| || || || || || ||| | || || | || || || Sbjct 97942 CAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTTCACTTG-CGGACTACAA 97884 Query 24883 CATTCAAAAGG 24893 ||||||||||| Sbjct 97883 CATTCAAAAGG 97873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449887010535240