Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq122 168 1e-35 seq502 167 4e-35 seq1 145 1e-28 seq4 118 2e-20 seq390 100 5e-15 >seq122 Length=187928 Score = 168 bits (186), Expect = 1e-35 Identities = 341/498 (68%), Gaps = 10/498 (2%) Strand=Plus/Plus Query 2018901 GCCGACTTTGGCCTCCCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTG 2018960 |||||||||| |||||| ||||||||||||||||| | ||| ||| ||||| Sbjct 7603 GCCGACTTTGAGGCGCCGTGGGTCGAAAAGTACCGCCCGCGCCTTCTCTCGGACGTCGTG 7662 Query 2018961 GGCAACGAGCACGCCGTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAAC 2019020 |||||| || | | ||| ||| | || |||| | ||| |||||| | || Sbjct 7663 GGCAACCGTGACACTATGGCCAGTCTCCAAGCCATGGCACGGGCCGGTAACATGACGAAT 7722 Query 2019021 CTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGC 2019080 | | || | || || |||||||| |||||||| |||||||| ||| || |||||| Sbjct 7723 TTAATCCTCTCTGGTCCTCCCGGCACTGGCAAGACGACGAGCATTTTGTGTCTCGCGCGC 7782 Query 2019081 GTGCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGC 2019140 | | | | || || || | | | || ||||||||||| || || || ||||| || Sbjct 7783 GAGTTGCTCGGTCCGAGCGTCAAGCAAGCAGTGCTCGAACTGAACGCATCGGACGATCGT 7842 Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACGCTT-CG-AAAAGAA-TCGAC-CT 2019196 || | ||| ||||| | | |||||| | | || || | |||| ||| || Sbjct 7843 GGTATCGACACGGTGCGGACGAAGATCAAG----ATGTTTGCGCAGCAGAAGGTGACGCT 7898 Query 2019197 GCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGC 2019256 || ||||||||||||||| | |||| ||||| || ||||||| | || | ||||| Sbjct 7899 TCCTCCCGGCCGCCACAAGCTCGTCATTCTCGACGAAGCCGACTCGATGACTGCTGCGGC 7958 Query 2019257 CCAGCAGGCCCTCCGATCG-ACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGG 2019315 ||||||||| | || ||| || ||||| | | | ||| ||||| ||||| ||| Sbjct 7959 CCAGCAGGCTTTGCG-TCGCACGATGGAGATCTTTTCAGCCACCACGCGCTTTGCATTGG 8017 Query 2019316 CCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCT 2019375 | ||||||| ||| | | | | || || || ||||||| || ||||| || || |||| Sbjct 8018 CTTGCAACAACTCGACCAAGATTATTGAGCCCATCCAGAGTCGGTGCGCGATTTTACGCT 8077 Query 2019376 TTGCGCGCCTCACCGACG 2019393 || |||| || | |||| Sbjct 8078 TTACGCGGCTGTCAGACG 8095 >seq502 Length=24025 Score = 167 bits (184), Expect = 4e-35 Identities = 334/487 (69%), Gaps = 10/487 (2%) Strand=Plus/Plus Query 2018901 GCCGACTTTGGCCTCCCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTG 2018960 |||||||||| |||||| ||||||||||||||||| | ||| ||| ||||| Sbjct 16445 GCCGACTTTGAGGCGCCGTGGGTCGAAAAGTACCGCCCGCGCCTTCTCTCGGACGTCGTG 16504 Query 2018961 GGCAACGAGCACGCCGTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAAC 2019020 |||||| || | | || ||| | || |||| | ||| |||||| | || Sbjct 16505 GGCAACCGTGACACTATGGCTAGTCTCCAAGCCATGGCACAGGCCGGTAACATGACGAAT 16564 Query 2019021 CTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGC 2019080 | | || | || || |||||||| |||||||| |||||||| ||| || |||||| Sbjct 16565 TTAATCCTCTCTGGTCCTCCCGGCACTGGCAAGACGACGAGCATTTTGTGTCTCGCGCGC 16624 Query 2019081 GTGCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGC 2019140 | | | | || || || | | | || ||||||||||| || || || ||||| || Sbjct 16625 GAGTTGCTCGGTCCGAGCGTCAAGCAAGCAGTGCTCGAACTGAACGCATCGGACGATCGT 16684 Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACGCTT-CG-AAAAGAA-TCGAC-CT 2019196 || | ||| ||||| | | |||||| | | || || || |||| ||| || Sbjct 16685 GGTATCGACACGGTGCGGACGAAGATCAAG----ATGTTTGCGCAACAGAAGGTGACGCT 16740 Query 2019197 GCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGC 2019256 || ||||||||||||||| | |||| ||||| || ||||||| | || | ||||| Sbjct 16741 TCCTCCCGGCCGCCACAAGCTCGTCATTCTCGACGAAGCCGACTCGATGACTGCTGCGGC 16800 Query 2019257 CCAGCAGGCCCTCCGATCG-ACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGG 2019315 ||||||||| | || ||| || ||||| | | | ||| ||||| ||||| ||| Sbjct 16801 CCAGCAGGCTTTGCG-TCGCACGATGGAGATCTTTTCAGCCACCACGCGCTTTGCATTGG 16859 Query 2019316 CCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCT 2019375 | ||||||| ||| | | | |||| || || ||||||| || ||||| || || |||| Sbjct 16860 CTTGCAACAACTCGACCAAGATCATTGAGCCCATCCAGAGTCGGTGCGCGATTTTACGCT 16919 Query 2019376 TTGCGCG 2019382 | |||| Sbjct 16920 TCACGCG 16926 >seq1 Length=763219 Score = 145 bits (160), Expect = 1e-28 Identities = 232/332 (70%), Gaps = 11/332 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || || || | ||||| ||||| || || ||||| | |||||||| Sbjct 607200 ACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGACCAGGCATTAAACCGCGCTT 607259 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||||||||||| ||||| ||| |||||||| ||||| || || || ||||| Sbjct 607260 CTTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGAAAAAAATGCCTTCAACTGCAGCAAA 607319 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGAT----CCACTTCATCG 794515 | | | ||||| || | | | | || ||| || ||| |||||||| | Sbjct 607320 GGCCAAAAGCCGTTCTGGATA--GGAAGAGACCC-----GTGGATCGCACCACTTCAGAG 607372 Query 794516 CCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 794575 |||| | || ||||| | || | || | || ||||| || || | || ||||||| Sbjct 607373 CCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCACGTAGTAGATGGTCCT 607432 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 |||| | || ||| || | || ||||| || | |||||||| || ||||| || | Sbjct 607433 TCTCAATCGCGTCTTTAATATACGTGTCAATCAAAAGCGAGTACACTTCCGAGTGTATAT 607492 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 | ||||| ||||| || || || ||||||||| Sbjct 607493 TCTCGATTGCGATTTGAAACCCGTAAAAGCAG 607524 Score = 125 bits (138), Expect = 1e-22 Identities = 177/249 (71%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 |||||| || || | || || || ||||| ||| |||||||| |||||||||| ||| Sbjct 606879 GACGCCAGCTTTCGAGTATTCTCCAACGCGTTTCTCAAAAAAGTTCGTCTTGCCCTGGAG 606938 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011 ||||||| |||||||| ||| ||||| | ||||| ||| || || Sbjct 606939 AGAGATCATGTCCATCCAATCGAATGGGTTCTTTGCATGGTAGATCTTGGATACTCCCAG 606998 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 ||| |||||| || || || || |||||||||||| ||||||||||| | | |||||| Sbjct 606999 CGAGTAAAGCAGACGATCAGCCACAAATTCAATGTACAGGCACATGAGGCCCGAGTTCAT 607058 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 ||| || ||| | || || ||||| || | || ||||| | || ||| | || || || Sbjct 607059 GCCAATCAGCTCGACCGGGAGCGAGTCACGCACGAACTCGTGTTCAATCGCCACAGCATC 607118 Query 794132 GATGATGAT 794140 | ||||| Sbjct 607119 GCGAATGAT 607127 Score = 96.9 bits (106), Expect = 5e-14 Identities = 167/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 796185 GGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGAT 796244 ||| || || ||| ||| |||||||| || || || || || ||||| || ||||| || Sbjct 607563 GGCTAGATTTTCATTCACAATGCCGTCACTAGCAGCAAAGAAAGCGAGCACATGCTTAAT 607622 Query 796245 AAAGTGACGCTCGTCGTCGCTGAG-CGAGACCCAGTGGACCGTGTCG-GCGCCGAGGTCG 796302 || | |||||||| ||| |||| | || |||| | | ||| || || || ||| Sbjct 607623 GAAATAACGCTCGTTGTCCGTGAGGCTAG-CCCAATCTTTCAGATCGTGCACC-AGATCG 607680 Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATA-TCCGTTG 796361 | ||||| || |||||||| || || || || || |||||||||| ||| | | ||| | Sbjct 607681 AGTTCCTCAGCTGTCCAAAAAGAAGCTTCAGCTTTCTTGTACATCTGCCACACTTCGT-G 607739 Query 796362 GTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 | | ||||| || || ||||||||||||| ||| | || | ||||||| Sbjct 607740 CTCCTGAATGGGAAAGAGCACAAAGCGATTGGAATTCGCAACAAGAAACGGCTCG 607794 >seq4 Length=584709 Score = 118 bits (130), Expect = 2e-20 Identities = 184/263 (70%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || || || || ||||||||||| || |||||||| | ||| || | | ||| || ||| Sbjct 119568 TGATCAACGTACCGCGCCGTGTCATTGAAGACGCGCAACATTGGAATGATGCCATTCGAC 119509 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 ||||| ||||| | |||| | | ||| || | |||||| | ||| Sbjct 119508 GACCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCACGAATGTTGTGCATACTGATCCCG 119449 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || ||||||||| || || ||| ||| || | || ||||| || || ||||| || Sbjct 119448 ATCCCGCCGGCCCATTTCGAAATGCACGCACATTGCTTGAGCGTGTCATAAATGCCTTCA 119389 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 |||||||| | | |||| |||| ||||||||||||||| || || || | ||||| Sbjct 119388 ATCGAGTCATCTTGCATGGCCAAGAGAAAGCACGACGAGAGCTGTGGACGAGGAGTGCCT 119329 Query 2073781 GCATTGAAGAGCGTGGGCGTCGC 2073803 || || |||||||| || ||||| Sbjct 119328 GCGTTAAAGAGCGTCGGTGTCGC 119306 >seq390 Length=50412 Score = 100 bits (110), Expect = 5e-15 Identities = 180/261 (69%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||||||||||||||| || ||||| || || ||||| | || || || || | | Sbjct 42200 TGAACTTGGTGACGGCCTTTGTGCCCTCAGACACAGCGTGTTTAGCAAGCTCACCCGGGA 42259 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTG--CGCTTGTTAGT 1485587 || ||||||||||| ||||| || || || | || |||| | |||||| Sbjct 42260 GCATAAGGCGCACGGCAGTCTGAATTTCACGACT--AGAAAGTGTCGATTTCTTGTTGTA 42317 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||| | || || ||||| | | ||||| |||| |||||||||| ||||||||| Sbjct 42318 GCGAGACAACTTTCCAGCCTCAGATGCAATGCGCTCGAAAATGTCGTTGATAAACGAGTT 42377 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| ||| ||| ||| ||| |||||||| || | ||||| Sbjct 42378 CATGATAGACATACCGCGCTTGCTGATACCCGTGTCCGGGTGCACTTGACGCAAAACCTT 42437 Query 1485708 GTAAACAAAGGACGAGTACGA 1485728 ||| | ||| |||||||| Sbjct 42438 GTAGATGTAGGTAGAGTACGA 42458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916046096701637