Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq157 116 2e-21 >seq157 Length=157498 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 || ||||| | ||| ||| ||||||||||||||||| | | || | || ||| Sbjct 63014 ACAAGGTGGAGGGTCGACTCTTTCTGAATGTTATAGTCGCTCAACGTACGACCGTCCTCC 63073 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | ||||| ||||| ||||| || ||||||||||| | || | || |||||||| | Sbjct 63074 AACTGCTTGCCGGCAAAGATTAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGA 63133 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || || || ||| | ||||| || | ||| ||||||| || || |||||| Sbjct 63134 ATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACATCAAGAGTGATTGTCTTT 63193 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || ||||||||||| |||||||| Sbjct 63194 CCCGTCAGCGTCTTTACAAAAATCTGCAT 63222 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | || || ||||| | ||| ||||||||| ||||| ||||| Sbjct 62312 CCTCCACGCAGACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 62371 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || | || |||| ||||| || || ||||| || ||||||||||| | || Sbjct 62372 AGAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGGTCAGGTGGA 62431 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || || || ||| | ||||| ||| | ||| || Sbjct 62432 ATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCTACG 62491 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||||| ||||||||||| | ||||| || || |||||||| Sbjct 62492 TCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62538 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | || || ||||||| ||| ||||||||| ||||| ||||| Sbjct 62540 CCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCACTC 62599 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | || | || |||| ||||| || || ||||| || |||||||| || | || Sbjct 62600 AAAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGATCAGGGGGA 62659 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || || || ||| | ||||| || | ||| ||| Sbjct 62660 ATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCCACA 62719 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||||| ||||||||||| | ||||| || || ||||||||| Sbjct 62720 TCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATG 62767 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | || || ||||||| ||| ||| ||||| ||||| ||||| Sbjct 62768 CCTCCACGCAGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTC 62827 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || | || |||| ||||| || || || || || ||||||||||| | || Sbjct 62828 AGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGA 62887 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || || || ||| | ||||| ||| | ||| || Sbjct 62888 ATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCAACG 62947 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || ||||||||||| | ||||| || || |||||||| Sbjct 62948 TCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62994 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34747 ATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTC 34806 |||||| || | || | || || ||||||| ||| ||| ||||| ||||| ||||| Sbjct 62080 ATTTCCACCACGCAGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTC 62139 Query 34807 CGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTG 34866 | | || | || |||| ||||| || || || || || ||||||||||| | Sbjct 62140 GCTCAAAGTACGTCCGTCTTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGG 62199 Query 34867 CGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTC 34926 || | || |||||||| | || || || || ||| | ||||| || | ||| Sbjct 62200 GGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTC 62259 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| | ||||| ||||| ||||| | ||||| || ||||||||||| Sbjct 62260 TACATCGAGAGTTATAGTCTTCCCCGTCAACGTCTTGACGAAGATCTGCAT 62310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325685325655577