Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4 179 4e-40 seq157 125 7e-24 seq55 125 7e-24 seq593 96.9 3e-15 seq43 93.3 4e-14 >seq4 Length=584709 Score = 179 bits (198), Expect = 4e-40 Identities = 357/524 (68%), Gaps = 15/524 (3%) Strand=Plus/Minus Query 147954 CGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGAC 148013 |||| |||||||||||||||||||| || | ||| ||||| ||||| |||| Sbjct 120924 CGCATGTAGTACATGCCCGTCTTGAGCCCTTTTTTCCACGCGTAAAAGTGCATGGACG-- 120867 Query 148014 ATGAGCGTG-TA--CGTCGGGTGCGGCACAAACAGA---TTAAACGACTGGCTCTGGTCA 148067 |||| || || |||||||| || ||| || || ||||| || ||||| | Sbjct 120866 -TGAGTTTGCTAATCGTCGGGTCCG---CAATGTGAATGTTCAACGATTGACTCTGACAA 120811 Query 148068 ATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGCC 148127 || ||||||||||| || |||| || || | | |||| ||| |||||||| | Sbjct 120810 ATAAACGCGCCACGATCCGCGGACAGATCGAGCACGGCCTTTTGCTTGATCTCCCACACT 120751 Query 148128 GTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGG 148187 ||||||||| || | ||| || | ||| ||| ||||| || || | | Sbjct 120750 GTCTTGTACTTTTCTTTCACGGCATCTGGCAGTGCGTGGATCTTTTGCACGGACCCACCG 120691 Query 148188 TGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCG 148247 | | ||||||||| |||| || | ||| | | | | || ||||| || | Sbjct 120690 TCGTTCAGAATCTGATTCCGCACTTGGGGCGTCCAGATGCCCAATTCAATCAGCTCTTTC 120631 Query 148248 ATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTG 148307 |||||||||| || || | | ||||||||| || | ||||| || |||| |||| Sbjct 120630 ATCAGATACTTGTTTACGATCGTAAACTCGCCAGCCAAGACGCGGCGATTGTACATGTTG 120571 Query 148308 CTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGC 148367 |||||| || |||| ||| |||||||||||||| || || ||||||| ||||||||| Sbjct 120570 GACGTAAAGGGCTCAATCGATTCGTTGTTGCCCAAGATTTGAGCGGTCGACGCCGTGGGC 120511 Query 148368 ATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCC 148427 ||| ||| |||| |||||||| || | || | | | | || |||||| ||| Sbjct 120510 ATGGGCGCGACCAAGAGCGAGTTCCGGAGCCCATGCTGCATGACCTTTTCCTTCAGTGCC 120451 Query 148428 GCCCAGTCCCAGAG---CGGCGACGGTGTCACGTTCCACATGTC 148468 ||||| |||||||| || ||||| || ||| ||||||||| Sbjct 120450 GCCCAATCCCAGAGGCCCGATGACGGCGTGACGCCCCACATGTC 120407 >seq157 Length=157498 Score = 125 bits (138), Expect = 7e-24 Identities = 149/200 (75%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACG--AGTCCTCGAGCTGCTTG 133520 ||| ||||||||||| || ||||| |||| || | | ||| |||||| | ||||||| Sbjct 62797 GGTCGACTCTTTCTGGATGTTGTAGTCGCTCA--GAGTACGGCCGTCCTCCAACTGCTTG 62854 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || ||||||| || |||||||| || || || ||||||||||| ||||| ||| Sbjct 62855 CCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTCTGC 62914 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | || | || ||| | ||||| ||||| | |||| || || || |||| | Sbjct 62915 TTCACGTTATCGATCGAGTCAGAAGGCTCAACGTCAAGAGTGATTGTCTTTCCCGTCAAA 62974 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || |||||||||||||| Sbjct 62975 GTCTTGACGAAAATCTGCAT 62994 Score = 122 bits (134), Expect = 8e-23 Identities = 148/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||||||||| || || || |||| || ||| |||| |||||| | ||||||| Sbjct 63025 GGTCGACTCTTTCTGAATGTTATAGTCGCTCAACGT--ACGACCGTCCTCCAACTGCTTG 63082 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || | || || || |||||||| || || || ||||||||||| ||||| ||| Sbjct 63083 CCGGCAAAGATTAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTCTGC 63142 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | || | || ||||| ||||| || || | |||| || || || ||||| Sbjct 63143 TTCACGTTGTCGATCGAGTCGGAAGGCTCAACATCAAGAGTGATTGTCTTTCCCGTCAGC 63202 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || ||||| ||||||||||| Sbjct 63203 GTCTTTACAAAAATCTGCAT 63222 Score = 113 bits (124), Expect = 4e-20 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACG--AGTCCTCGAGCTGCTTG 133520 ||| ||||||||||| || ||||| |||| || || ||| ||| || | ||||||| Sbjct 62113 GGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGT--ACGTCCGTCTTCCAACTGCTTG 62170 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || ||||||| || |||||||| || || || ||||||||||| ||||| ||| Sbjct 62171 CCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTCTGC 62230 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | || | || ||||| ||||| || |||| || | || || || |||| Sbjct 62231 TTCACGTTGTCGATCGAGTCGGAAGGCTCTACATCGAGAGTTATAGTCTTCCCCGTCAAC 62290 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| Sbjct 62291 GTCTTGACGAAGATCTGCAT 62310 Score = 113 bits (124), Expect = 4e-20 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||| ||||| || ||||| |||| || || ||| |||||| | ||||||| Sbjct 62341 GGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGT--ACGTCCGTCCTCCAACTGCTTG 62398 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || | || || || |||||||| || || || ||||||||||| ||||| ||| Sbjct 62399 CCAGCAAAGATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTCTGC 62458 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | || | || ||| | ||||| ||||||| || | || || || |||| | Sbjct 62459 TTCACGTTATCGATCGAGTCAGAAGGCTCTACGTCGAGAGTTATAGTCTTTCCCGTCAAA 62518 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || |||||||||||||| Sbjct 62519 GTCTTGACGAAAATCTGCAT 62538 Score = 111 bits (122), Expect = 2e-19 Identities = 148/204 (73%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||| ||||| || ||||| || | || || ||| |||||| | ||||||| Sbjct 62569 GGTCGACTCCTTCTGGATGTTGTAGTCACTCAAAGT--ACGTCCGTCCTCCAACTGCTTG 62626 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || | || || || ||||| || || || || ||||||||||| ||||| ||| Sbjct 62627 CCAGCAAAGATTAGACGTTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGAATCTTCTGC 62686 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | || | || ||||| |||||||| |||| || | || || || |||| | Sbjct 62687 TTCACGTTGTCGATCGAGTCGGAAGGCTCCACATCGAGAGTTATAGTCTTTCCCGTCAAA 62746 Query 133641 GTTTTTACGAAAATCTGCATGGCT 133664 || || ||||||||||||||| || Sbjct 62747 GTCTTGACGAAAATCTGCATGCCT 62770 >seq55 Length=263441 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || |||||||| |||||||| || ||| || | | | || |||||||||||||| Sbjct 150845 GTCGATTCTTTCTGAATATTGTAGTCCGCCAAAGTCCGGCCA-TCTTCGAGCTGCTTGCC 150903 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || |||||||||||||| || || ||||||||||| || || || || Sbjct 150904 AGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTGTCCTGAATTTTCTGTTT 150963 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| | || | |||||||||||| | || | ||| ||||| ||||| || Sbjct 150964 GACATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATGGTCTTGCCCGTCAGGGT 151023 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 151024 CTTGACGAAAATCTGCAT 151041 >seq593 Length=12966 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || |||||||| || | || | ||||||||||| || || |||||||||||| Sbjct 9143 TCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTG 9202 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||||| | | |||| |||| | || |||||||| | || | | Sbjct 9203 TCCTGGATTTTCTGCTTTACATTGTCAATGCTGTCTGACGGTTCCACGTCCAGCGTAATG 9262 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||| |||| ||||| || |||||||||||| Sbjct 9263 GTCTTGCCCGTCAACGTTTTGACAAAAATCTGCATG 9298 >seq43 Length=290853 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || |||||||| || | || | ||||||||||| || || |||||||||||| Sbjct 97908 TCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTG 97967 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||||| | | |||| |||| | || |||||||| | || | | Sbjct 97968 TCCTGGATTTTCTGCTTTACATTGTCAATGCTGTCTGACGGTTCCACGTCCAGCGTAATG 98027 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || ||||| |||| || || || |||||||||||| || Sbjct 98028 GTCTTGCCCGTCAACGTCTTGACAAAAATCTGCATGACT 98066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483409421482920