Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4 129 1e-24 >seq4 Length=584709 Score = 129 bits (142), Expect = 1e-24 Identities = 410/629 (65%), Gaps = 9/629 (1%) Strand=Plus/Plus Query 110301 GACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATC 110360 ||||| ||||| || ||||| || || || | || | |||||||||||||| | || Sbjct 119135 GACTACTTTGGGTTTAAAACGCTCGAGCGAGGGTACCTCTTTCGTGTCAATGGCAAAGTC 119194 Query 110361 ATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATT 110420 | || ||||| ||||| ||| |||| ||||| || | || || || || || || Sbjct 119195 GTCGAGCGTCCGCAACAGATGCTTCTCCGTGTGGCATTGGGCATCCACAAGCACGACATC 119254 Query 110421 AAAGCTGTTATTGAATGTTATGATGT-ATTAAGTAAAAAGAAAGCTATTCATGCTACTCC 110479 || || | |||| ||||| | || | | ||| || || || || || Sbjct 119255 AAGGCCGCGCTTGAGACGTATGAGCTCATGTCGCAGAAATTCTT-TACCCACGCGACACC 119313 Query 110480 TACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAAT 110539 || || ||||||||||| ||| | | ||| | | || |||||||| | | || Sbjct 119314 GACGCTCTTTAACGCAGGCACTCCTCGTCCACAGCTCTCGTCGTGCTTTCTCTTGGCCAT 119373 Query 110540 TAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAA 110599 | ||||| || |||||||| |||||||| | || || || ||| ||||| || Sbjct 119374 GCAAGATGACTCGATTGAAGGCATTTATGACACGCTCAAGCAATGTGCGTGCATTTCGAA 119433 Query 110600 AAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAA-AGGAGCAAATATCG 110658 | | || || || || || | || | ||||| | | | ||| | || Sbjct 119434 ATGGGCCGGCGGGATCGGGATCAGTATGCACAACATTCGTGCCACCAACAGCTACATCCG 119493 Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 || |||| || | || | ||| | |||||||||| | |||||||| ||||| | Sbjct 119494 AGGCA-CGAACGGGTCGTCGAATGGCATCATTCCAATGTTGCGCGTCTTCAATGACACGG 119552 Query 110719 CAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAAC 110775 | || || ||||||||||| ||| | || ||||| ||||| |||||||| || | Sbjct 119553 CGCGGTACGTTGATCAAGGTGGTGGGAAGCGCAAAGGCTCGTTTGCCATCTATCTAGAGC 119612 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAAC 110835 | ||||| | ||| | ||||| || |||| | || ||||| || || || | Sbjct 119613 CCTGGCACGCCGATGTGTTTGAGTTTCTAGAGTTGCGGAAAAACCACGGCAACGAGTTGC 119672 Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTC 110895 | | || || ||||| |||| ||| ||||| | | ||| | || ||||| || || Sbjct 119673 ATCGTGCTCGGGATTTGTTTTTTGCCTTGTGGGTCCCGGATCTCTTTATGAAGCGCGTGG 119732 Query 110896 AAGAAAATGGCATGTG--GTCTCTTATGT 110922 ||| ||||||| ||| ||||||| ||| Sbjct 119733 AAGCCAATGGCACGTGGAGTCTCTTTTGT 119761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186784167028563