Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq157 127 5e-24 >seq157 Length=157498 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||| | || || || || || ||| | || || || ||| ||| Sbjct 62307 CAGATCTTCGTCAAGACGTTGACGGGGAAGACTATAACTCTCGATGTAGAGCCTTCCGAC 62248 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| |||||||| || || ||||||||| || ||| ||| Sbjct 62247 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCAGCAA 62188 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || || |||||||||||||| ||| | |||||| ||| |||||| || Sbjct 62187 CGTCTCATTTTTGCTGGCAAGCAGTTGGAAGACGGACGTACTTTGAGCGACTACAACATC 62128 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || ||||||||||| ||| | || || Sbjct 62127 CAGAAAGAGTCGACCCTTCACCTTGTGTTGCGCCTGCG 62090 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||||| ||| ||||| || ||||| || |||||| | || || || ||| || Sbjct 63219 CAGAT-TTTTGTAAAGACGCTGACGGGAAAGACAATCACTCTTGATGTTGAGCCTTCCGA 63161 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 | | |||| || ||||| |||||||| || || ||||||||| || ||| || Sbjct 63160 CTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCAGCA 63101 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || ||||| ||||| ||||||||||| || || | || ||| ||| || ||| | Sbjct 63100 ACGTCTAATCTTTGCCGGCAAGCAGTTGGAGGACGGTCGTACGTTGAGCGACTATAACAT 63041 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || || |||||||| ||| | || || Sbjct 63040 TCAGAAAGAGTCGACCCTCCACCTTGTGTTGCGTCTGCG 63002 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || |||||| | || || || ||||||| Sbjct 62991 CAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCTGAC 62932 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| |||||||| || || ||||||||| || ||| ||| Sbjct 62931 TCGATCGATAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCAGCAA 62872 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || || ||||||||||| || || | ||| || ||| |||||| || Sbjct 62871 CGTCTCATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAACATC 62812 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || ||||||||||| ||| | || || Sbjct 62811 CAGAAAGAGTCGACCCTTCACCTTGTGTTGCGCCTGCG 62774 Score = 118 bits (130), Expect = 3e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || || ||| | || || || ||||||| Sbjct 62535 CAGATTTTCGTCAAGACTTTGACGGGAAAGACTATAACTCTCGACGTAGAGCCTTCTGAC 62476 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| |||||||| || || ||||||||| || ||| ||| Sbjct 62475 TCGATCGATAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAGCAA 62416 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || ||||||||||| || ||| | ||| || ||| |||||| || Sbjct 62415 CGTCTAATCTTTGCTGGCAAGCAGTTGGAGGACGGACGTACTCTGAGCGACTACAACATC 62356 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || || |||||||| ||| | || || Sbjct 62355 CAGAAGGAGTCGACCCTCCACCTTGTGTTGCGTCTGCG 62318 Score = 118 bits (130), Expect = 3e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || || ||| | || ||||| ||| ||| Sbjct 62763 CAGATTTTCGTCAAGACTTTGACGGGAAAGACTATAACTCTCGATGTGGAGCCTTCCGAC 62704 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| |||||||| || || ||||||||| || || ||| Sbjct 62703 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGATCAGCAA 62644 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || ||||||||||| || ||| | |||||| || |||||| || Sbjct 62643 CGTCTAATCTTTGCTGGCAAGCAGTTGGAGGACGGACGTACTTTGAGTGACTACAACATC 62584 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || ||||||||||| ||| | || || Sbjct 62583 CAGAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCG 62546 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||| ||||||||||| || ||||| ||||||| || |||||| |||||| Sbjct 62546 CGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCACTCAAAGTA 62605 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||| || |||| |||||| || || ||||| || ||||| ||| Sbjct 62606 CGTCCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGA 62650 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||| ||||||||||| || ||||||||||||| || ||||| |||||| Sbjct 62090 CGCAGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTA 62149 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||| ||||||| |||||| || || || || || ||||| || Sbjct 62150 CGTCCGTCTTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTG 62193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181792287465243