Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 232 1e-54 seq4 159 5e-33 seq122 140 5e-27 seq502 134 2e-25 >seq1 Length=763219 Score = 232 bits (256), Expect = 1e-54 Identities = 405/577 (70%), Gaps = 18/577 (3%) Strand=Plus/Minus Query 1455740 AACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGA-TATGGGAAATGTACCAAAAAGG 1455798 || |||||||| || || ||||| | | || || | | ||| | |||||| | |||| Sbjct 607769 AATCGCTTTGTGCTCTTTCCCATTCAGGAGCA-CGAAGTGTGGCAGATGTACAAGAAAG- 607712 Query 1455799 CCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGC-CGACACGGTCCACTGG 1455857 | || || || |||||||| || ||||| |||| || || || ||| | | ||| Sbjct 607711 CTGAAGCTTCTTTTTGGACAGCTGAGGAACTCGATCT-GGTGCACGATCTGAAAGATTGG 607653 Query 1455858 GTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGC 1455917 | || | ||| ||||||| ||||||| ||||| || ||||| || ||| || || Sbjct 607652 GCTAGCCTCACGGACAACGAGCGTTATTTCATTAAGCATGTGCTCGCTTTCTTT-GCTGC 607594 Query 1455918 CAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCC 1455977 || || ||||| ||| || || || ||| |||| || || || || |||| Sbjct 607593 TAGTGACGGCATTGTGAATGAAAATCTAGCCATGAATTTTAGCAACGAAGTGCAGGTGCC 607534 Query 1455978 AGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTA 1456037 |||||| || | ||||||||||| || ||||| ||||| || || ||||| ||| || Sbjct 607533 AGAGGCTCGCTGCTTTTACGGGTTTCAAATCGCAATCGAGAATATACACTCGGAAGTGTA 607474 Query 1456038 CTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGC 1456097 |||||| |||| ||||| || | || ||| || | ||||||||||| || | || || Sbjct 607473 CTCGCTTTTGATTGACACGTATATTAAAGACGCGATTGAGAAGGACCATCTACTACGTGC 607414 Query 1456098 CATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTG----GATCA 1456153 ||||| || | || | || | ||||| || ||||||| ||||||| |||| Sbjct 607413 TATCGAGACTATCCCTTGCGTCACCAAAAAAGCGCACTGGGCTCTGAAGTGGTGCGATCC 607354 Query 1456154 ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCAT 1456212 || ||| ||| | || | | || ||||| | | |||||| || || || ||||| Sbjct 607353 AC-----GGGTCTCTTC-CTATCCAGAACGGCTTTTGGCCTTTGCTGCAGTTGAAGGCAT 607300 Query 1456213 CTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 |||||||| ||| |||||| ||||||||||||||||||||||||| | ||||| || Sbjct 607299 TTTTTTCTCTGGCTCATTCTGCTCCATCTTTTGGCTCAAGAAGCGCGGTTTAATGCCTGG 607240 Query 1456273 TCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 || | ||||| ||||| |||| || || ||||| Sbjct 607239 TC-TAAGCTTTTCAAACGAGCTTATTAGCCGGGACGA 607204 >seq4 Length=584709 Score = 159 bits (176), Expect = 5e-33 Identities = 217/301 (72%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 || || ||| |||||||||| | || || ||| ||||| || ||||||||||| || Sbjct 119270 ACGTATGAGCTCATGTCGCAGAAATTCTTTACCCACGCGACACCGACGCTCTTTAACGCA 119329 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 ||||| || || || ||| |||||||||||||| |||| |||| | | || ||||| Sbjct 119330 GGCACTCCTCGTCCACAGCTCTCGTCGTGCTTTCTCTTGGCCATGCAAGATGACTCGATT 119389 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || ||||| ||||||||||||||||| || ||| ||| || || ||||||||| ||| Sbjct 119390 GAAGGCATTTATGACACGCTCAAGCAATGTGCGTGCATTTCGAAATGGGCCGGCGGGATC 119449 Query 260063 GGTTTTGCCGCA--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCC 260120 || | | | | ||||| | || ||| | | |||| | ||||| ||||| Sbjct 119450 GGGAT--CAGTATGCACAACATTCGTGCCACCAACAGCTACATCCGAGGCACGAACGGGT 119507 Query 260121 AGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACC 260180 ||| || ||| | | || ||| | ||||| || || ||||||||||| ||||| || | Sbjct 119508 CGTCGAATGGCATCATTCCAATGTTGCGCGTCTTCAATGACACGGCGCGGTACGTTGATC 119567 Query 260181 A 260181 | Sbjct 119568 A 119568 Score = 93.3 bits (102), Expect = 6e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 262873 GGCCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCG 262932 |||| |||||| |||| |||||| || ||| |||||||| || || |||||| Sbjct 120434 GGCCTCTGGGATTGGGCGGCACTGAAGGAAAAGGTCATGCAGCATGGGCTCCGGAACTCG 120493 Query 262933 TTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCG 262992 | | || |||| |||||||||||| |||| | || ||| ||||||||| ||| || Sbjct 120494 CTCTTGGTCGCGCCCATGCCCACGGCGTCGACCGCTCAAATCTTGGGCAACAACGAATCG 120553 Query 262993 TTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTAC 263048 | ||| | | ||| |||||| |||| |||||||| | | ||||| ||||| Sbjct 120554 ATTGAGCCCTTTACGTCCAACATGTACAATCGCCGCGTCTTGGCTGGCGAGTTTAC 120609 >seq122 Length=187928 Score = 140 bits (154), Expect = 5e-27 Identities = 329/494 (67%), Gaps = 2/494 (0%) Strand=Plus/Minus Query 332856 CGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCA 332915 |||| | || ||| |||||| | || || || || ||||| | || ||| || | | Sbjct 8095 CGTCTGACAGCCGCGTAAAGCGTAAAATCGCGCACCGACTCTGGATGGGCTCAATAATCT 8036 Query 332916 TTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-C 332974 | | ||| ||||||| |||| ||||| ||||| || | | | ||||| || | Sbjct 8035 TGGTCGAGTTGTTGCAAGCCAATGCAAAGCGCGTGGTGGCTGAAAAGATCTCCATCGTGC 7976 Query 332975 GACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATC 333034 ||| | | ||||| |||||||| | || | ||||||| |||||||| |||| || | Sbjct 7975 GAC-GCAAAGCCTGCTGGGCCGCAGCAGTCATCGAGTCGGCTTCGTCGAGAATGACGAGC 7917 Query 333035 TTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGC 333094 |||||||| ||| | || || ||| | | | || ||||| || | ||| Sbjct 7916 TTGTGGCGGCCGGGAGGAAGCGTCACCTTCTGCTGCGCAAACATCTTGATCTTCGTCCGC 7857 Query 333095 ACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCC 333154 || ||| | || || |||||||| ||||| ||||||||||| || | | | || | Sbjct 7856 ACCGTGTCGATACCACGATCGTCCGATGCGTTCAGTTCGAGCACTGCTTGCTTGACGCTC 7797 Query 333155 GCACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGA 333214 | ||| | | ||||||| || ||| |||||||| |||||||| |||||||| ||| Sbjct 7796 GGACCGAGCAACTCGCGCGCGAGACACAAAATGCTCGTCGTCTTGCCAGTGCCGGGAGGA 7737 Query 333215 CCCGCCAGCAAGAGGTTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACG 333274 || | || | | || | |||||| ||| | |||| || | ||| ||| | Sbjct 7736 CCAGAGAGGATTAAATTCGTCATGTTACCGGCCCGTGCCATGGCTTGGAGACTGGCCATA 7677 Query 333275 GCGTGCTCGTTGCCGACAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCCATGGG 333334 | || |||||| || | ||| ||| | |||||||||||||||| ||| || Sbjct 7676 GTGTCACGGTTGCCCACGACGTCCGAGAGAAGGCGCGGGCGGTACTTTTCGACCCACGGC 7617 Query 333335 AGGCCAAAGTCGGC 333348 |||||||||| Sbjct 7616 GCCTCAAAGTCGGC 7603 >seq502 Length=24025 Score = 134 bits (148), Expect = 2e-25 Identities = 321/479 (67%), Gaps = 6/479 (1%) Strand=Plus/Minus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAG 332932 ||||| | || || || || ||||| | || ||| |||| | | | ||| ||||||| Sbjct 16920 AAGCGTAAAATCGCGCACCGACTCTGGATGGGCTCAATGATCTTGGTCGAGTTGTTGCAA 16861 Query 332933 GCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGGCCTGTTG 332991 |||| ||||| ||||| || | | | ||||| || |||| | | ||||| || Sbjct 16860 GCCAATGCAAAGCGCGTGGTGGCTGAAAAGATCTCCATCGTGCGAC-GCAAAGCCTGCTG 16802 Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051 |||||| | || | ||||||| |||||||| |||| || ||||||||| ||| | || Sbjct 16801 GGCCGCAGCAGTCATCGAGTCGGCTTCGTCGAGAATGACGAGCTTGTGGCGGCCGGGAGG 16742 Query 333052 CAGA-TCAACCCTTTTCGAG-GCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCG 333109 || ||| |||| | | || ||||| || | ||||| ||| | || Sbjct 16741 AAGCGTCA--CCTTCTGTTGCGCAAACATCTTGATCTTCGTCCGCACCGTGTCGATACCA 16684 Query 333110 CGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACG 333169 || |||||||| ||||| ||||||||||| || | | | || || ||| | | || Sbjct 16683 CGATCGTCCGATGCGTTCAGTTCGAGCACTGCTTGCTTGACGCTCGGACCGAGCAACTCG 16624 Query 333170 CGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGAGG 333229 ||||| || ||| |||||||| |||||||| |||||||| ||||| | || | | Sbjct 16623 CGCGCGAGACACAAAATGCTCGTCGTCTTGCCAGTGCCGGGAGGACCAGAGAGGATTAAA 16564 Query 333230 TTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTGCTCGTTGCCG 333289 || | |||||| ||| | |||| || | ||| || | | || |||||| Sbjct 16563 TTCGTCATGTTACCGGCCTGTGCCATGGCTTGGAGACTAGCCATAGTGTCACGGTTGCCC 16504 Query 333290 ACAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCCATGGGAGGCCAAAGTCGGC 333348 || | ||| ||| | |||||||||||||||| ||| || |||||||||| Sbjct 16503 ACGACGTCCGAGAGAAGGCGCGGGCGGTACTTTTCGACCCACGGCGCCTCAAAGTCGGC 16445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177629581189046