Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq593 125 6e-24 seq43 122 8e-23 seq157 105 6e-18 seq55 91.5 1e-13 >seq593 Length=12966 Score = 125 bits (138), Expect = 6e-24 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||||||||||||||| || || | | || | || || || ||||| || ||||| | Sbjct 9108 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 9167 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | |||| || ||||||||| ||| || ||||| | | ||| Sbjct 9168 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACA-TTG 9226 Query 35667 CCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 || | |||| || |||||| |||| ||| || || || |||||||| ||||| ||| Sbjct 9227 TCAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTTTTGACA 9286 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 9287 AAAATCTGCAT 9297 >seq43 Length=290853 Score = 122 bits (134), Expect = 8e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||||||||||||||| || || | | || | || || || ||||| || ||||| | Sbjct 97873 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 97932 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | |||| || ||||||||| ||| || ||||| | | ||| Sbjct 97933 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACA-TTG 97991 Query 35667 CCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 || | |||| || |||||| |||| ||| || || || |||||||| || || ||| Sbjct 97992 TCAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACA 98051 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 98052 AAAATCTGCAT 98062 >seq157 Length=157498 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565 |||||||||||| | | |||||| | || | || ||| || || |||||||| || Sbjct 62080 ATTTCCACCACGCAGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTC 62139 Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625 | ||| || || |||| |||| |||||| || ||||| || | || |||||||| | Sbjct 62140 GCTCAAAGTACGTCCGTCTTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGG 62199 Query 35626 AGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATT 35684 |||| | ||||||||| ||||| ||||||| |||| | | || |||| | | Sbjct 62200 GGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCGGAAGGCT 62258 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || | || || || || |||||||| || || || || |||||||| Sbjct 62259 CTACATCGAGAGTTATAGTCTTCCCCGTCAACGTCTTGACGAAGATCTGCAT 62310 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || ||| || || |||| |||| |||||| || ||||| Sbjct 62575 CTCCTTCTGGATGTTGTAGTCACTCAAAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAA 62634 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||| || | |||| | ||||||||| ||||| ||||||| || Sbjct 62635 GATTAGACGTTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCAC-GT 62693 Query 35665 TGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | || |||| | ||||| || | || || || || ||||||||||| || | Sbjct 62694 TGTCGATCGAGTCGGAAGGCTCCACATCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGA 62753 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 62754 CGAAAATCTGCAT 62766 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||| || || || |||| |||| |||||| || ||||| Sbjct 62347 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAA 62406 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||||| | |||| | ||||||||| ||||| ||||||| | Sbjct 62407 GATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTT 62466 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| | || || || | || || || || ||||||||||| || || Sbjct 62467 ATCGATCGAGTCAGAAGGCTCTACGTCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGAC 62526 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 62527 GAAAATCTGCAT 62538 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| ||| || || || |||| |||| |||||| || ||||| Sbjct 62803 CTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAA 62862 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||||| | |||| | ||||||||| ||||| ||||||| | Sbjct 62863 AATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTT 62922 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| | || || || | ||||| || || ||||||||||| || || Sbjct 62923 ATCGATCGAGTCAGAAGGCTCAACGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGAC 62982 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 62983 GAAAATCTGCAT 62994 >seq55 Length=263441 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | |||||| | || | ||| || || ||||| ||||| || ||| Sbjct 150815 CCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCCGCC 150874 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || |||||||| || ||||| |||| ||||||||||| | ||| Sbjct 150875 AAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGA 150934 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCG-TGTCGCTCGATTCCAC 35688 | | ||||||||| || || || || | | ||| || | | || | ||||| Sbjct 150935 ATCCCTTCCTTGTCCTGAATTTTCTGTTTGACA-TTGTCAATGCTATCCGAGGGCTCCAC 150993 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 |||| ||| || || || ||||||| || || || || ||||||||| Sbjct 150994 GTCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCATT 151042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450782989445640