Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq55 167 2e-36 seq593 140 3e-28 seq43 136 4e-27 seq157 134 1e-26 seq4 100 3e-16 >seq55 Length=263441 Score = 167 bits (184), Expect = 2e-36 Identities = 174/223 (78%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||||||||||||| ||||| ||||| || ||||| ||||||| |||||| || | Sbjct 150824 AGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCCGCCAA-AGTCCG 150882 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || |||||||| ||||| ||||| |||| ||||||||| ||||| || || ||||| Sbjct 150883 GCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTC 150942 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGAG 134673 || || |||||||| |||||||| || ||||| | || || | |||||||| || | Sbjct 150943 CTTGTCCTGAATTTTCTGTTTGACATTGT-CAATGCTATCCGAGGGCTCCACGTCCAGCG 151001 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||||| || || || | || || |||||||| |||||||| Sbjct 151002 TAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCATTTT 151044 >seq593 Length=12966 Score = 140 bits (154), Expect = 3e-28 Identities = 150/195 (77%), Gaps = 10/195 (5%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG----TCGTCGAGCTGTTTGCCTGCA 134579 ||||||||||||||||||| ||| |||| | || || || || ||||| ||| Sbjct 9108 CCTTTTGAATGTTGTAGTCCGCAA----GTGAACGGCCATCTTCAAGTTGCTTGCCAGCA 9163 Query 134580 AAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACC 134639 || |||||||||||||| || ||||| |||||||| || || || ||||| || || || Sbjct 9164 AAGATCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACA 9223 Query 134640 GCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTT 134698 || ||||| |||| |||| ||||||||| || |||||||| || || || || ||||| Sbjct 9224 TTGT-CAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTTTT 9282 Query 134699 AACGAAAATTTGCAT 134713 || ||||| ||||| Sbjct 9283 GACAAAAATCTGCAT 9297 >seq43 Length=290853 Score = 136 bits (150), Expect = 4e-27 Identities = 149/195 (76%), Gaps = 10/195 (5%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG----TCGTCGAGCTGTTTGCCTGCA 134579 ||||||||||||||||||| ||| |||| | || || || || ||||| ||| Sbjct 97873 CCTTTTGAATGTTGTAGTCCGCAA----GTGAACGGCCATCTTCAAGTTGCTTGCCAGCA 97928 Query 134580 AAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACC 134639 || |||||||||||||| || ||||| |||||||| || || || ||||| || || || Sbjct 97929 AAGATCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACA 97988 Query 134640 GCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTT 134698 || ||||| |||| |||| ||||||||| || |||||||| || || || || || || Sbjct 97989 TTGT-CAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTT 98047 Query 134699 AACGAAAATTTGCAT 134713 || ||||| ||||| Sbjct 98048 GACAAAAATCTGCAT 98062 >seq157 Length=157498 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || |||||||| ||||| || || || ||||| || ||||||||||| | Sbjct 62540 CCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCACTC 62599 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || | ||| ||||| ||||| || | ||| |||||||| || || Sbjct 62600 AAAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGATCAGGGGGA 62659 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || ||||| || || || || ||| | | |||||| | ||||| Sbjct 62660 ATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCCACA 62719 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || || || || ||||| || |||||||| ||||| Sbjct 62720 TCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62766 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || |||||||| ||||| || || || ||||| || ||||||||||||| Sbjct 62312 CCTCCACGCAGACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 62371 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || | ||| ||||| ||||| || | ||| ||||| || || || Sbjct 62372 AGAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGGTCAGGTGGA 62431 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || ||||| || || || || || | | ||| || | || ||| Sbjct 62432 ATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCTACG 62491 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || || || || ||||| || |||||||| ||||| Sbjct 62492 TCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62538 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || |||||||| ||||| || || || || || || |||||||||||| Sbjct 62081 TTTCCACCACGCAGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCG 62140 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | || | ||| || | ||| ||||| |||||||| | ||| ||||| || || Sbjct 62141 CTCAAAGTACGTCCGTCTTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGG 62200 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || ||||| || || ||||| || || || || ||| | | |||||| | || Sbjct 62201 GGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCT 62260 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| || || || || || || || || ||||| || ||||| Sbjct 62261 ACATCGAGAGTTATAGTCTTCCCCGTCAACGTCTTGACGAAGATCTGCAT 62310 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || |||||||| ||||| || || || || || || ||||||||||||| Sbjct 62768 CCTCCACGCAGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTC 62827 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || | ||| ||||| |||||||| | ||| ||||| || || || Sbjct 62828 AGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGA 62887 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || ||||| || || || || || | | ||| || | || ||| Sbjct 62888 ATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCAACG 62947 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || || || || ||||| || |||||||| ||||| Sbjct 62948 TCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62994 >seq4 Length=584709 Score = 100 bits (110), Expect = 3e-16 Identities = 233/349 (67%), Gaps = 2/349 (1%) Strand=Plus/Plus Query 8842 CGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAAC 8901 || || ||||| ||||| || ||||||||| || |||| |||||||| |||| ||| Sbjct 120485 CGGAACTCGCTCTTGGTCGCGCCCATGCCCACGGCGTCGACCGCTCAAATCTTGGGCAAC 120544 Query 8902 AACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGAT 8961 |||||||| ||||||| || || |||| ||||| | || || ||||| ||||| Sbjct 120545 AACGAATCGATTGAGCCCTTTACGTCCAACATGTACAATCGCCGCGTCTTGGCTGGCGAG 120604 Query 8962 TTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGATCGAAGCGGGCGTTTACGACG-A 9020 ||| || | || || ||||| || |||| ||| |||| | | |||| Sbjct 120605 TTTACGATCGTAAACAAGTATCTGATGAAAGAGCTGATTGAATTGGGCATCT-GGACGCC 120663 Query 9021 CAAAATGCGCGATGCCATCGTGGAAGCCAACGGCAGCGTTCAGAACATTGACGCGGTGCC 9080 | || |||| || || || | | | || ||| || || || |||| |||| Sbjct 120664 CCAAGTGCGGAATCAGATTCTGAACGACGGTGGGTCCGTGCAAAAGATCCACGCACTGCC 120723 Query 9081 TCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAAGCAAAGCACGCTGATCGG 9140 | | | ||||| ||| || || || ||||| || ||||||| | || ||| Sbjct 120724 AGATGCCGTGAAAGAAAAGTACAAGACAGTGTGGGAGATCAAGCAAAAGGCCGTGCTCGA 120783 Query 9141 CATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAAC 9189 || | |||||| | ||||| |||||| |||||||||||| || ||| Sbjct 120784 TCTGTCCGCGGATCGTGGCGCGTTTATTTGTCAGAGTCAATCGTTGAAC 120832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505386504185160