Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 176 6e-39 seq4 89.7 7e-13 >seq1 Length=763219 Score = 176 bits (194), Expect = 6e-39 Identities = 392/579 (68%), Gaps = 11/579 (2%) Strand=Plus/Plus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 ||||| || | ||||| | ||||| ||||| | || |||||||||| ||| ||||| Sbjct 607201 CCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGACCAGGCATTAAACCGCGCTTC 607260 Query 39698 TTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAA 39756 ||||||||||| |||| |||| || || ||||| || || |||||||| ||||| ||||| Sbjct 607261 TTGAGCCAAAAGATGG-AGCAGAATGAGCCAGAGAAAAAAATGCCTTCAACTGCAGCAAA 607319 Query 39757 TGCAACAAGTCTCTCTCCGTA--ACTTGTATCAT-TATGTATCCACTTCTGTGCCCAATC 39813 || | ||| | ||| || | | | | || ||||||| | ||||| | Sbjct 607320 GGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGATCGCACCACTTCAGAGCCCAGTG 607379 Query 39814 AGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTC-AT 39872 ||||| || | || ||||| || || || |||||| | |||| | || || || Sbjct 607380 CGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCACGTAGTAGATGGTCCTTCTCAAT 607439 Query 39873 CACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAA 39932 | | ||||||| ||| || || || || || |||| ||| || || || || || | Sbjct 607440 CGC-GTCTTTAATATACGTGTCAATCAAAAGCGAGTACACTTCCGAGTGTATATTCTCGA 607498 Query 39933 TCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC--TGAACAAAA 39990 | || || ||||| |||||||| || | || || | | || || || || ||| Sbjct 607499 TTGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCTGGCACCTGCACTTCGTTGCTAAAAT 607558 Query 39991 TCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATG 40050 || | || | |||||||||||| || || |||||||| ||||| || || | ||||| Sbjct 607559 TCAT--GGCTAGATTTTCATTCACAATGCCGTCACTAGCAGCAAAGAAAGCGAGCACATG 607616 Query 40051 TTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATAT 40110 ||||| ||||| || | | || | || ||| || || | ||| | | Sbjct 607617 CTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAGCCCAATCTTTCAGATCGTGCACCAG 607676 Query 40111 ATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATC 40170 ||| | ||| |||||||||||||| || || || || || |||||||| | ||| | || Sbjct 607677 ATCGAGTTCCTCAGCTGTCCAAAAAGAAGCTTCAGCTTTCTTGTACATCTGCCACACTTC 607736 Query 40171 ACGATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209 | | || || ||||| | ||||| | ||| | ||| Sbjct 607737 GTGCTCCTGAATGGGAAAGAGCACAAAGCGATTGGAATT 607775 >seq4 Length=584709 Score = 89.7 bits (98), Expect = 7e-13 Identities = 277/429 (65%), Gaps = 0/429 (0%) Strand=Plus/Minus Query 69011 CGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATG 69070 ||||||| || ||||| || || || ||| | || |||| | | || || |||| Sbjct 120314 CGTAATAGATCGTTTCAAAGATTTTTCGATTCAAGTCGCGTGCGGATTGGCTCTCAAATG 120255 Query 69071 GATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTAT 69130 | ||| | |||||||| ||||| ||||||||||| || ||||| |||| || | | Sbjct 120254 CAAAATTCATGAGAATAAAAGCATCAGCCAATCCCTGCACGCCAATGCCGACCGGGCGGT 120195 Query 69131 GTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 69190 | | | |||| || ||| |||||||| | ||||| || || | || || | || | Sbjct 120194 GGCGCATATTGGACGTTTGGGCTTCTGGCACTGGATAGTAGTTGACGTCAATGACCTTGT 120135 Query 69191 TAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCAT 69250 | | || || || ||||| |||||||| | ||||| | | ||||| || | Sbjct 120134 TTAAGTTGCGCGTCACCACTTTGACCACGTCGTAGAGTTTCCGGTAGTCAAAGACCCCGT 120075 Query 69251 CTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAAT 69310 || |||||| | || || || || || | || || || || || || | ||| Sbjct 120074 CTTGCACAAACTTGGGCAAGGCCACCGACGCCAAGTTGCACACGGCCACTTCGTCCGAAG 120015 Query 69311 TTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCT 69370 | ||||| || | || || | |||||| || ||| || || || ||||||| Sbjct 120014 ACGTATATTCCATCACTTCACAGCACAAATTACTCGATCGGATCGTGCCAAGGTTTTGCT 119955 Query 69371 GATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCT 69430 | || || ||| |||||| || || || || | || || || ||||||| Sbjct 119954 GGTTCGATTTGCGGTTCGCGGCGTCTTTATAGAGCATGTAAGGGACGCCCGTCTCAATCT 119895 Query 69431 GAGATTCGA 69439 ||| |||| Sbjct 119894 GAGCGTCGA 119886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686892631884120