Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 152 4e-32 seq154 113 4e-20 >seq1 Length=763219 Score = 152 bits (168), Expect = 4e-32 Identities = 383/573 (67%), Gaps = 23/573 (4%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| | ||||| ||||| | || || | ||||| |||||||| ||||| | || Sbjct 607763 TTTGTGCTCTTTCCCATTCAGGAGCACGAAGTGTGGCAGATGTACAAGAAAGCTGAAGCT 607704 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || ||||||||||| || ||| | ||| || | || | | ||||| | Sbjct 607703 TCTTTTTGGACAGCTGAGGAACTCGATCTGGTGCACGATCTGAAAGATTGGGCT------ 607650 Query 43820 AAACCACAAGAAAAACATT--TTATATCTTTG-----GTTTTGGCGTTTTTTGCTGCGAG 43872 | || || | | ||| |||| || || || | || || |||||||| || Sbjct 607649 -AGCCTCACGGACAACGAGCGTTATTTCATTAAGCATGTGCTCGCTTTCTTTGCTGCTAG 607591 Query 43873 CGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA-GAAGTTCAATTACCAG 43931 ||||| || || ||||||||| | | | | ||| |||| ||||| || | |||| Sbjct 607590 TGACGGCATTGTGAATGAAAATCTAGCCA-TGAATTTTAGCAACGAAGTGCAGGTGCCAG 607532 Query 43932 AAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACA 43991 | || || || ||||| ||||||||||| || || || ||||| || |||||| ||||| Sbjct 607531 AGGCTCGCTGCTTTTACGGGTTTCAAATCGCAATCGAGAATATACACTCGGAAGTGTACT 607472 Query 43992 GTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGA 44051 ||| |||| || ||||| || ||||| | | |||||| | | | | ||| | Sbjct 607471 CGCTTTTGATTGACACGTATATTAAAGACGCGATTGAGAAGGACCATCTACTACGTGCTA 607412 Query 44052 TAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCA 44110 | || || | || |||| | | | ||||| ||||||| || || ||| || || Sbjct 607411 TCGAGACTATCCCTTGCG-TCACCAAAAAAGCGCACTGGGCTCTGAAGTGGTGCGATCCA 607353 Query 44111 AATG---ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTT 44167 | ||| | | |||||| ||| | || ||||| | || ||||||||||| || Sbjct 607352 CGGGTCTCTTCCTATCCAGAACGGCTTTTGGCCTTTGCTGCAGTTGAAGGCATTTTTTTC 607293 Query 44168 TCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGAC 44226 || || || || ||| |||| |||||| | ||||| || ||||| |||||||| | | Sbjct 607292 TCTGGCTCATTCTGC-TCCATCTTTTGGCTCAAGAAGCGCGGTTTAATGCCTGGTCTAAG 607234 Query 44227 GTTTTCAAATGAGTTAATAAGTCGTGATGAAGG 44259 |||||||| ||| | || || || || || || Sbjct 607233 CTTTTCAAACGAGCTTATTAGCCGGGACGAGGG 607201 >seq154 Length=161528 Score = 113 bits (124), Expect = 4e-20 Identities = 304/456 (67%), Gaps = 8/456 (2%) Strand=Plus/Plus Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACT 40925 || || ||||| || || || || ||||| | ||| || |||||||| || ||| | Sbjct 91923 GGGGACCTTGGACCGGTATACGGCTTTCAATGGCGTCACTTTGGAGCCAAGTATACGAAC 91982 Query 40926 ATGTACTCTGATTATACCAATAAAGGAATGGATCAA-TTACAGTGCGTTATAGATACGAT 40984 ||| | |||| || || |||| | ||||| || ||| | || || || | | | Sbjct 91983 ATGCATGCTGACTACACTGGCCAAGGCGTTGATCAGCTTGCAGAG-GTAATCGAAAAGCT 92041 Query 40985 TAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACA 41044 | | |||| |||||| || | |||| || ||||| ||| | || || | Sbjct 92042 GCGAACGAATCCAACGGACCGACGGATTGTTTTGTCGGCATGGAATCCAGCCGATTTAAA 92101 Query 41045 TTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACT 41104 |||||| | || ||||| || |||| || || || || || ||||| || | Sbjct 92102 CGAAATGGCACTTCCTCCTTGCCACATGTTTTGCCAATTCTATGTGGCAAATGGAGAGTT 92161 Query 41105 GTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 ||| |||||| |||| || | || | ||||||||||| || || |||||||| || || Sbjct 92162 GTCGTGTCAAATGTACCAGCGCTCGGCCGACATGGGACTTGGTGTGCCGTTTAATATCGC 92221 Query 41165 GAGTTATGCTCTGCT--CACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAA 41222 || || || ||||| ||||| | || |||| || || || | || ||||| ||| Sbjct 92222 TAGCTACGCACTGCTGACACGTCT-TG-TTGCTCAAGTGACTGGGCTCAAGCCTGGCGAA 92279 Query 41223 TTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAG-A 41281 ||| | ||| | || |||| ||| | || | |||||| | | ||| | |||| | Sbjct 92280 TTTATCCACGTCATTGGCGATGCACACGTGTATTTAAATCACGTGGTGCCACT-ACAGAA 92338 Query 41282 ACAACTGACACGAAAACCTAGACCATTTCCAACGCT 41317 ||||||||| || | || | ||||| |||||||| Sbjct 92339 ACAACTGACGCGTACCCCACGCCCATTCCCAACGCT 92374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446878757415