Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4 113 4e-20 seq157 95.1 1e-14 >seq4 Length=584709 Score = 113 bits (124), Expect = 4e-20 Identities = 294/445 (66%), Gaps = 10/445 (2%) Strand=Plus/Minus Query 130733 AGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACG 130792 || ||||| | || || || || | ||| ||| || ||||||| |||||| | | | Sbjct 120639 AGCTCTTTCATCAGATACTTGTTTACGATCGTAAACTCGCCAGCCAAGACGCGGCGATTG 120580 Query 130793 TAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTT 130852 || |||||| ||| || || |||| |||||||||||||| || ||||| || || | Sbjct 120579 TACATGTTGGACGTAAAGGGCTCAATCGATTCGTTGTTGCCCAAGATTTGAGCGGTCGAC 120520 Query 130853 GCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGC 130912 || ||||||||| || || || || || || || || || ||| | ||| ||| | Sbjct 120519 GCCGTGGGCATGGGCGCGACCAAGAGCGAGTTCCGGAGCCCATGCTGCATGACCTTTTCC 120460 Query 130913 TTCAATTCATCCCAATCCCATAG---AGAGGTAGGTTTGACATTGTTCCACATATCAAAT 130969 |||| | | |||||||||| || || | || |||| | |||||| |||||| Sbjct 120459 TTCAGTGCCGCCCAATCCCAGAGGCCCGATGACGGCGTGAC---GCCCCACATGTCAAAT 120403 Query 130970 TGTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACGA 131029 || | || |||| ||| ||||| | ||||| ||||| || || | Sbjct 120402 TGAAAGATCCCTTGACTCGCGGGCGACCCCTTGAACGTCTCGTACGGACCCACGGCCATT 120343 Query 131030 GCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTT 131089 || || || || | ||||| | ||||||| || ||||| |||| | ||| Sbjct 120342 GCAAGCTCCATGGACGTTTCCATCGACGCGTAATAGATCGTTTCAAAGATTTTTCGATTC 120283 Query 131090 AATTGTTTCGCTTGG--TTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGA 131147 || || || || | |||||| | | ||| ||||| | ||||||||| || || | Sbjct 120282 AA--GTCGCGTGCGGATTGGCTCTCAAATGCAAAATTCATGAGAATAAAAGCATCAGCCA 120225 Query 131148 GACCCTGTATCCCAACGCCCACCGG 131172 ||||| | |||| ||| ||||| Sbjct 120224 ATCCCTGCACGCCAATGCCGACCGG 120200 >seq157 Length=157498 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 27017 ATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC 27076 ||| || || |||| ||||| || | || | || || ||||| || || |||||||| Sbjct 62080 ATTTCCACCACGCAGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTC 62139 Query 27077 GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGG 27136 ||||| | || ||||||| | ||| || || || |||||||||| || || || || Sbjct 62140 GCTCAAAGTACGTCCGTCTTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGG 62199 Query 27137 CGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTC 27196 || | || || || || ||||| | |||| | | || | | ||| | | || Sbjct 62200 GGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTC 62259 Query 27197 AACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || |||||||||| || ||||||| || || || ||||| |||||| || Sbjct 62260 TACATCGAGAGTTATAGTCTTCCCCGTCAACGTCTTGACGAAGATCTGCATACCT 62314 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| |||| ||||| || | || | || || ||||| || || |||||||||| Sbjct 62766 TGCCTCCACGCAGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGC 62825 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | || |||| || | ||| || || || |||||||||| || || || || | Sbjct 62826 TCAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGG 62885 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||| | |||| | | || | | ||| | | |||| Sbjct 62886 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCAA 62945 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || ||||| || | || ||||||| ||| || || || || |||||| Sbjct 62946 CGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATA 62995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424924648153896