Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 122 1e-22 >seq1 Length=763219 Score = 122 bits (134), Expect = 1e-22 Identities = 356/541 (66%), Gaps = 17/541 (3%) Strand=Plus/Plus Query 129717 CCAGCTTGCCA-TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 129775 ||||||| | | || || ||||| || ||||| || ||||| ||||| || | | | Sbjct 606883 CCAGCTTTCGAGTATTCTCCAACGCGTTTCTCAAAAAAGTTCGTCTTGCCCTGGAGAGAG 606942 Query 129776 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGT 129835 || | ||||| |||| ||||||||||||| | | || | ||||| | | Sbjct 606943 ATCATGTCCATCCAATCGAATGGGTTCTTTGCATGGTAGATCTTGGATACTCCCAGCGAG 607002 Query 129836 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCG 129895 | || |||||||| | || | ||||||||| |||| | |||||||| || Sbjct 607003 TAAAGCAGACGATCAGCCACAAATTCAATGTACAGGCACATGAGGCCCGAGTTCATGCCA 607062 Query 129896 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGC 129955 || || | ||||||| ||| | |||| | | ||||| ||||||| || || Sbjct 607063 ATCAGCTCGACCGGGAGCGAGTCACGCACGAACTCGTGTTCAATCGCCACAGCATCGCGA 607122 Query 129956 ACGATGGCGTGAATG--GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-- 130011 | ||| |||| | | || | | || ||| | | || ||| ||| |||| | Sbjct 607123 ATGATTTCGTGCACGCGGTATTC-TGGCAGCT-TGGTGACCAAT---TTG--GAGTACAA 607175 Query 130012 ----CACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGC 130067 |||| |||| ||| ||| | ||||||||| ||| || || || || || |||| Sbjct 607176 AAGGCACG-CAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGC 607234 Query 130068 ACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGA 130127 ||||| ||||| | ||| |||||||| | ||| || || | || ||||||||||||| Sbjct 607235 TTAGACCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGA 607294 Query 130128 AGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTG 130187 | || || || || || || || || || || || || | | |||| | | || Sbjct 607295 AAAAAATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTG 607354 Query 130188 TATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCG 130247 ||| ||||||||| ||||| ||||| ||||| || || |||| |||| ||| | Sbjct 607355 GATCGCACCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAG 607414 Query 130248 C 130248 | Sbjct 607415 C 607415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618420643581480