Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4 138 1e-27 seq1 125 8e-24 seq317 100 3e-16 >seq4 Length=584709 Score = 138 bits (152), Expect = 1e-27 Identities = 363/546 (66%), Gaps = 11/546 (2%) Strand=Plus/Plus Query 104321 CACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTC 104380 ||||| ||||| || ||||| || || || || || | || || | || ||||| Sbjct 119303 CACGCGACACCGACGCTCTTTAACGCAGGCACTCCTCGTCCACAGCTCTCGTCGTGCTTT 119362 Query 104381 CTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCG 104440 || | |||| | || ||||| || | || || |||| || || | | | |||||| Sbjct 119363 CTCTTGGCCATGCAAGATGACTCGATTGAAGGCATTTATGACACGCTCAAGCAATGTGCG 119422 Query 104441 CAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA- 104499 || || || ||||| || || || ||||| || || | | | |||| || Sbjct 119423 TGCATTTCGAAATGGGCCGGCGGGATCGGGATCAGTATGCACAACATTCGTGCCACCAAC 119482 Query 104500 ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATT 104559 | || || || || || || || || |||| || ||||||||| | ||||| || Sbjct 119483 AGCTAC-ATCCGAGGCACGAACGGGTCGTCGAATGGCATCATTCCAATGTTGCGCGTCTT 119541 Query 104560 TAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGT 104616 || | ||| ||||| || || |||||| ||| | || || || || | || | Sbjct 119542 CAATGACACGGCGCGGTACGTTGATCAAGGTGGTGGGAAGCGCAAAGGCTCGTTTGCCAT 119601 Query 104617 CTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGG 104676 |||||| ||||| |||||||| ||| | | ||||| || |||||||| ||||| || Sbjct 119602 CTATCTAGAGCCCTGGCACGCCGATGTGTTTGAGTTTCTAGAGTTGCGGAAAAACCACGG 119661 Query 104677 TGACGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCA 104735 ||||| | || ||| || ||| | || | || | ||| | || |||||||| | Sbjct 119662 CAACGAGTTGCATCG-TGCTCGGGATTTGTTTTTTGCCTTGTGGGTCCCGGATCTCTTTA 119720 Query 104736 TGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTC 104795 ||||| | || || | | ||||| ||| |||||||||||| || | || || |||| Sbjct 119721 TGAAGCGCGTGGAAGCCAATGGCACGTGGAGTCTCTTTTGTCCCAACGAAGCGCCGGGTC 119780 Query 104796 TCTCCGATGCCGT--GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGG 104853 | | ||| ||| |||||| | |||||| ||| | ||| ||||||| | ||||| Sbjct 119781 TGTACGA--ACGTTGGGGTGACGCGTTTGAGGCCTTGTACGTCCAGTACGAACAGGAAGG 119838 Query 104854 TCGGGC 104859 || || Sbjct 119839 CCGTGC 119844 >seq1 Length=763219 Score = 125 bits (138), Expect = 8e-24 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG-TCGCGTTCCTTTGCTGAGCG 94808 || |||||| | |||||| ||||||||| ||| || | || | ||||| | | || || Sbjct 607388 AAAAAAGCGCACTGGGCTCTGAAGTGGTGCGATCCACGGGTCTC-TTCCTATCCAGAACG 607330 Query 94809 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 94868 || || || ||||| ||||| || || || |||||||| || |||||| | || | Sbjct 607329 GCTTTTGGCCTTTGCTGCAGTTGAAGGCATTTTTTTCTCTGGCTCATTCTGCTCCATCTT 607270 Query 94869 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 94928 ||||||||||||||| ||| | ||||| ||||| |||| || ||||||||||| || Sbjct 607269 TTGGCTCAAGAAGCGCGGTTTAATGCCTGGTCTAAGCTTTTCAAACGAGCTTATTAGCCG 607210 Query 94929 TGACGAGGGACTCCACCAAGAGTTTGCG 94956 |||||||| | ||| || |||||| Sbjct 607209 GGACGAGGGTATGCACACGGACTTTGCG 607182 >seq317 Length=75193 Score = 100 bits (110), Expect = 3e-16 Identities = 326/496 (66%), Gaps = 19/496 (4%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || |||||||| || |||||| || ||| ||| || | || | |||||| ||||| Sbjct 7782 CGGTCAAAGCGCCCCGGACGACAAAGTGCGGGATCGAGTACTTCTAGGCGATTTGTCGCT 7841 Query 9584 GCGATGACAA-CAATACCTG----TTTCATTATCAAAACCATCCATCTCTGTCAAAAGTT 9638 || | |||| || | | | |||| || |||| |||||||| |||||||| | | Sbjct 7842 GCAAGCACAATCACTCCATTAGCCTTTCCTT--CAAACCCATCCATTTCTGTCAACAACT 7899 Query 9639 GGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTC 9698 | || | || ||||| |||||||| || | || || ||| ||| | ||| Sbjct 7900 GATTGAGCGTCTGTTCTCGTTCATCGTTTGAATTGATTCCGCCAC----GCGCT--TTTG 7953 Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC-- 9756 ||| ||||||||||||||||| || ||||| || | ||| | |||| | || | Sbjct 7954 CCAGCGCATCAATCTCATCAATAAAAACGATACACTG-TGAGTACTGCGA-TGCCTGCGT 8011 Query 9757 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9816 |||||| |||||||| || || || ||| || | |||||| ||||||| | || Sbjct 8012 AAAGAGGTCCCGTACTCGAGCTGCACCGCGACCCACTAGCATCTCGACAAAGTCCGATGC 8071 Query 9817 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876 || || || || | || | ||| || | |||||||||||||||||||| Sbjct 8072 CGAGCAAAAGAGAAATGCTACGCCTGCTTCGGAGGCTACTGCTCGGGCGAGAAGAGTCTT 8131 Query 9877 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 9936 || || |||| || || || | ||| ||| | ||||| ||| | | Sbjct 8132 GCCTGTTCCTGAAGGTCCACAAAGCAGCACGCCTTTTGGGACTTTGGCTCCAATGGCTTG 8191 Query 9937 GTATCTCTCAGGTTG-CTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGT 9995 |||| | | || || | ||| ||| || |||| ||| ||||| || | ||||| ||| Sbjct 8192 GTATTTTGCTGGATGTCGTAA-AAAGTCAACAACTTCCTCCAACTCTTTCCTGGCGCCGT 8250 Query 9996 CAATCCCCTCAACATC 10011 | || || | ||||| Sbjct 8251 CGATGCCGGCCACATC 8266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583247071498920