Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq154 89.7 4e-13 >seq154 Length=161528 Score = 89.7 bits (98), Expect = 4e-13 Identities = 180/266 (68%), Gaps = 1/266 (0%) Strand=Plus/Minus Query 111670 TTTGGAAAGGGGGTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAA 111729 || |||| ||| || || | || || || ||| |||| ||| | |||||||||| Sbjct 92370 TTGGGAATGGGCGTGGGGTA-CGCGTCAGTTGTTTCTGTAGTGGCACCACGTGATTTAAA 92312 Query 111730 TAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGT 111789 || || || ||||| || || ||||| ||||| | ||||| | ||||| | || Sbjct 92311 TACACGTGTGCATCGCCAATGACGTGGATAAATTCGCCAGGCTTGAGCCCAGTCACTTGA 92252 Query 111790 GCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATA 111849 |||| | ||| || || ||| ||||| || ||||| |||||||| || ||||| Sbjct 92251 GCAACAAGACGTGTCAGCAGTGCGTAGCTAGCGATATTAAACGGCACACCAAGTCCCATG 92192 Query 111850 TCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAA 111909 || |||| | || || | ||||| || | | | || |||||| ||||| ||| Sbjct 92191 TCGGCCGAGCGCTGGTACATTTGACACGACAACTCTCCATTTGCCACATAGAATTGGCAA 92132 Query 111910 AGTACATGACAAGGAGGCAATGCCAT 111935 | | || |||||||| | |||||| Sbjct 92131 AACATGTGGCAAGGAGGAAGTGCCAT 92106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391936605215929