Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 215 6e-51 seq8 107 2e-18 >seq4 Length=584709 Score = 215 bits (238), Expect = 6e-51 Identities = 309/430 (72%), Gaps = 4/430 (1%) Strand=Plus/Plus Query 53198 CGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGACTTA 53257 || || || ||||| |||||| ||||| || | | | ||||||||| || | Sbjct 119222 CGTGTGGCATTGGGCATCCACAAGCACGACATCAAGGCCGCGCTTGAGACGTATGAGCTC 119281 Query 53258 ATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCAC 53317 ||| || || | |||||| ||||| || || || || || ||||| || || || Sbjct 119282 ATGTCGCAGAAATTCTTTACCCACGCGACACCGACGCTCTTTAACGCAGGCACTCCTCGT 119341 Query 53318 CCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTAC 53377 || ||| | ||| ||||| || |||| ||| | ||||||||||| || ||||| || Sbjct 119342 CCACAGCTCTCGTCGTGCTTTCTCTTGGCCATGCAAGATGACTCGATTGAAGGCATTTAT 119401 Query 53378 GAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TG 53436 || ||||||||| | ||||| ||| || || ||| | || || ||||| ||| || Sbjct 119402 GACACGCTCAAGCAATGTGCGTGCATTTCGAAATGGGCCGGCGGGATCGGGATCAGTATG 119461 Query 53437 CTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA-TGGAA 53495 | | ||| | ||||| | | || ||| || |||||||| |||| ||| ||| | Sbjct 119462 CAC-AACATTCGTGCCACCAACAGCTACATCCGAGGCACGAACGG-GTCGTCGAATGGCA 119519 Query 53496 TCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGA 53555 || | || ||| | ||||||||||| ||||||| |||||||| | || |||||||||| Sbjct 119520 TCATTCCAATGTTGCGCGTCTTCAATGACACGGCGCGGTACGTTGATCAAGGTGGTGGGA 119579 Query 53556 AGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTC 53615 ||||||| || ||||| |||||||| || ||||| ||||||||||| | | ||||||| Sbjct 119580 AGCGCAAAGGCTCGTTTGCCATCTATCTAGAGCCCTGGCACGCCGATGTGTTTGAGTTTC 119639 Query 53616 TCGAGCTGCG 53625 | ||| |||| Sbjct 119640 TAGAGTTGCG 119649 Score = 91.5 bits (100), Expect = 2e-13 Identities = 293/453 (65%), Gaps = 15/453 (3%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 || || || ||||| || | || ||||| ||||| || |||||||| ||||| ||| || Sbjct 120479 GGGCTCCGGAACTCGCTCTTGGTCGCGCCCATGCCCACGGCGTCGACCGCTCAAATCTTG 120538 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||||||||||| || | ||||| | ||| ||||||| ||| ||||| | | || Sbjct 120539 GGCAACAACGAATCGATTGAGCCCTTTACGTCCAACATGTACAATCGCCGCGTCTTGGCT 120598 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657 || |||||| || | |||||| | || | || || ||| | | || ||| Sbjct 120599 GGCGAGTTTACGATCGTAAACAAGTATCTGATGAAAGAGCTGATTGAATTGGGCATCTGG 120658 Query 55658 AACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAGATT 55717 | || || | || | ||| || |||| |||||||| || | |||| Sbjct 120659 ACGCCCCAAGTGCGGAATCAGATTCTGAACGACGGTGGGTCCGTGCAAA------AGATC 120712 Query 55718 C---CTCTGC-----GTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG 55768 | | |||| | | | || || | ||| ||| ||||||||||| || ||| Sbjct 120713 CACGCACTGCCAGATGCCGTGAAAGAAAAGTACAAGACAGTGTGGGAGATCAAGCAAAAG 120772 Query 55769 AGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC 55828 || | || || || |||||||| |||| || ||| || || ||||| Sbjct 120773 GCCGTGCTCGATCTGTCCGCGGATCGTGGCGCGTTTATTTGTCAGAGTCAATCGTTGAAC 120832 Query 55829 ATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAG 55888 || ||| | | | || | | ||| | | || ||||||||||||| |||||| Sbjct 120833 ATTCACATTGCGGACCCGACGATTAGCAAACTCACGTCCATGCACTTTTACGCGTGGAAA 120892 Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCGG 55921 || || ||||||||||| |||||||| ||||| Sbjct 120893 AAAGGGCTCAAGACGGGCATGTACTACATGCGG 120925 >seq8 Length=519435 Score = 107 bits (118), Expect = 2e-18 Identities = 231/340 (68%), Gaps = 4/340 (1%) Strand=Plus/Plus Query 151896 ACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAACTCCGGCTCCACCTGTTGACC 151955 ||||||||| || | ||| || | ||| || ||| | || || || | | |||||| Sbjct 328322 ACCGTTGACAAGCACCATGGGAATAATTGGAATGTACCATTCGGGTTCAATCGATTGACC 328381 Query 151956 GTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGATCGAATATCCGTCGAGTCAT 152015 ||| || | || || |||||| ||||| | |||||| | ||| || |||| Sbjct 328382 GTCCTCAACCAGATACTTCAAACAATCGTTGTCCGAAGGATCGTAAATCACGCGTGTCAG 328441 Query 152016 AGGACTCAAACGC-GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCC 152074 | ||| || ||||| ||||| |||| |||||||| |||||||| || | | Sbjct 328442 CTG-CTCTAAGTTAGTGAAAATGTAACGGGCACTGGCCGCGTCCTTGCCTCCCATTAAAC 328500 Query 152075 GCGTTCCAAACTGTCC-AGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTC 152133 | || ||||| || || | ||| | || || | || |||||| || || || | | Sbjct 328501 GAGTACCAAATTGGCCGATCGGGGAC-AGAAGATGGATATTGTTGCTACCAACAAAGTCC 328559 Query 152134 TGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGC 152193 || |||| ||| ||||| ||||| | |||| |||||||| || || || | ||| Sbjct 328560 TGTGCCATATTGACAATACATCCCTGTAAACTCTGCTCACCGTGATGGTAAGCAGAGTGC 328619 Query 152194 TCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCG 152233 || | || ||| ||||||||||| ||||| || || |||| Sbjct 328620 TCAGAGACGTAACCCGCCAACTGTGCCACTTTGATCTCCG 328659 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||||||||||||||| | || || || |||||||| || | ||| ||||| ||||| Sbjct 328454 AGTGAAAATGTAACGGGCACTGGCCGCGTCCTTGCCTCCCATTAAACGAGTACCAAATTG 328513 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 || |||| || || | | |||||| || ||||||| || |||| ||||| Sbjct 328514 GCCGATCGGGGACAGAAGATGGATATTGTTGCTACCAACAAAGTCCTGTGCCATATTGAC 328573 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 ||| || || | ||| |||||| || || || || | ||||| | ||||| || Sbjct 328574 AATACATCCCTGTAAACTCTGCTCACCGTGATGGTAAGCAGAGTGCTCAGAGACGTAACC 328633 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGAC 117511 ||||| ||| ||||| || || || ||| Sbjct 328634 CGCCAACTGTGCCACTTTGATCTCCGAC 328661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547203119903400