Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq593 118 7e-22 seq43 114 8e-21 >seq593 Length=12966 Score = 118 bits (130), Expect = 7e-22 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 ||||||||||||| || || | ||||| || | ||||||||||| || || ||||| | Sbjct 9108 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 9167 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA 34636 | |||||||| ||||| ||||| | || |||||||| ||| || || |||| Sbjct 9168 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGT 9227 Query 34637 AAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACA 34695 ||| ||||| || | ||||| |||| || || || || || || |||||||| ||| Sbjct 9228 CAATGCTGTCTGACGGT-TCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTTTTGACA 9286 Query 34696 AAAATCTGCATG 34707 |||||||||||| Sbjct 9287 AAAATCTGCATG 9298 >seq43 Length=290853 Score = 114 bits (126), Expect = 8e-21 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 ||||||||||||| || || | ||||| || | ||||||||||| || || ||||| | Sbjct 97873 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 97932 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA 34636 | |||||||| ||||| ||||| | || |||||||| ||| || || |||| Sbjct 97933 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGT 97992 Query 34637 AAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACA 34695 ||| ||||| || | ||||| |||| || || || || || || ||||| || ||| Sbjct 97993 CAATGCTGTCTGACGGT-TCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACA 98051 Query 34696 AAAATCTGCATG 34707 |||||||||||| Sbjct 98052 AAAATCTGCATG 98063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314722377250739