Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq154 98.7 9e-16 >seq154 Length=161528 Score = 98.7 bits (108), Expect = 9e-16 Identities = 252/381 (66%), Gaps = 2/381 (1%) Strand=Plus/Plus Query 34331 ATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAG 34390 || ||||| | | | || || || || | |||||| | || || | | | || || Sbjct 91860 ATATGGGATGGTAATGGATCACGTGAGTATCTGGATAGTCGAGGCCTACAAAGCCGCGAA 91919 Query 34391 GAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGG 34450 | || ||| | || ||||| ||||| || || ||| | |||||||| || ||||| | Sbjct 91920 GTTGGGGACCTTGGACCGGTATACGGCTTTCAATGGCGTCACTTTGGAGCCAAGTATACG 91979 Query 34451 GGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACAC 34509 | | || ||||| | || || || | || ||||| |||| | || ||||| | Sbjct 91980 AACATGCATGCTGACTACACTGGCCAAGGCGTTGATCAGCTTGCAG-AGGTAATCGAAAA 92038 Query 34510 CTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCT 34569 || ||| || ||| || |||| || ||| || ||||| || ||| | Sbjct 92039 GCTGCGAACGAATCCAACGGACCGACGGATTGTTTTGTCGGCATGGAATCCAGCCGATTT 92098 Query 34570 CCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGA 34629 ||||| || || || ||||||| | ||||||||||| || || ||||| || Sbjct 92099 AAACGAAATGGCACTTCCTCCTTGCCACATGTTTTGCCAATTCTATGTGGCAAATGGAGA 92158 Query 34630 GCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACAT 34689 | |||| || || | || || || |||| |||||||| | || |||||||| || || Sbjct 92159 GTTGTCGTGTCAAATGTACCAGCGCTCGGCCGACATGGGACTTGGTGTGCCGTTTAATAT 92218 Query 34690 TGCTAGTTACGCTCTGCTCAC 34710 ||||| ||||| ||||| || Sbjct 92219 CGCTAGCTACGCACTGCTGAC 92239 Score = 98.7 bits (108), Expect = 9e-16 Identities = 252/381 (66%), Gaps = 2/381 (1%) Strand=Plus/Minus Query 6635 GTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGT 6694 || ||||| ||||| ||||| || || |||||||| || | |||||||| |||| || Sbjct 92239 GTCAGCAGTGCGTAGCTAGCGATATTAAACGGCACACCAAGTCCCATGTCGGCCGAGCGC 92180 Query 6695 TGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCAC 6754 || || | || || |||| ||| ||||| || || ||||||||||| | ||||||| Sbjct 92179 TGGTACATTTGACACGACAACTCTCCATTTGCCACATAGAATTGGCAAAACATGTGGCAA 92120 Query 6755 GGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTG 6814 || || || ||||| | ||| || ||||| || ||| || |||| || | Sbjct 92119 GGAGGAAGTGCCATTTCGTTTAAATCGGCTGGATTCCATGCCGACAAAACAATCCGTCGG 92060 Query 6815 TCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTCCGCTCCCTGTCC 6873 || || ||| || | ||||| || | |||| ||||| || | || || || Sbjct 92059 TCCGTTGGATTCGTTCGCAGCTTTTCGATTACCT-CTGCAAGCTGATCAACGCCTTGGCC 92001 Query 6874 CGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTA 6933 | ||||| || | | | ||||| || |||||||| | ||| || || ||||| Sbjct 92000 AGTGTAGTCAGCATGCATGTTCGTATACTTGGCTCCAAAGTGACGCCATTGAAAGCCGTA 91941 Query 6934 GACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCG 6993 ||||| || | ||| || | || || | | | || || | |||||| | || || Sbjct 91940 TACCGGTCCAAGGTCCCCAACTTCGCGGCTTTGTAGGCCTCGACTATCCAGATACTCACG 91881 Query 6994 AGACCCGTGAGCGTCCCAGAT 7014 || || | | | ||||| || Sbjct 91880 TGATCCATTACCATCCCATAT 91860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448251849023760