Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq157 192 1e-43 seq55 149 1e-30 seq43 136 9e-27 seq593 132 1e-25 >seq157 Length=157498 Score = 192 bits (212), Expect = 1e-43 Identities = 173/215 (80%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTC 210964 |||||||| || || |||||||| || |||||||| || | ||| | | | || || || Sbjct 63014 ACAAGGTGGAGGGTCGACTCTTTCTGAATGTTATAGTCGCTCAACG-TACGACCGTCCTC 63072 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || ||||||||| || ||||| || ||||| |||||||| |||| ||||||||||||||| Sbjct 63073 CAACTGCTTGCCGGCAAAGATTAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTG 63132 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||| || |||||||| ||||| | ||| || ||||| || |||||||| ||||| Sbjct 63133 AATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACATCAAGAGTGATTGTCTT 63192 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCATTTTAT 211119 |||||| || ||||||||||| | ||||||| ||| Sbjct 63193 TCCCGTCAGCGTCTTTACAAAAATCTGCATTGTAT 63227 Score = 183 bits (202), Expect = 7e-41 Identities = 166/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||||||||| || |||||||| |||||||| || || || || | || || ||| Sbjct 62786 ACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCC 62845 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | ||||||||| || || || || ||||| |||||||| |||| ||||||||||||||| Sbjct 62846 AACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGA 62905 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || |||||||| ||||| | |||||| ||||| || |||||||| |||||| Sbjct 62906 ATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCAACGTCAAGAGTGATTGTCTTT 62965 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| | |||||| || || | |||||| Sbjct 62966 CCCGTCAAAGTCTTGACGAAAATCTGCAT 62994 Score = 179 bits (198), Expect = 9e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 |||||||| || || ||||| || |||||||| || || || || | ||| || ||| Sbjct 62330 ACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCGTCCTCC 62389 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | ||||||||| || ||||| || ||||| |||||||| |||| ||||||||||||||| Sbjct 62390 AACTGCTTGCCAGCAAAGATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGA 62449 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || |||||||| ||||| | |||||| || || |||||||| || |||||| Sbjct 62450 ATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCTACGTCGAGAGTTATAGTCTTT 62509 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| | |||||| || || | |||||| Sbjct 62510 CCCGTCAAAGTCTTGACGAAAATCTGCAT 62538 Score = 174 bits (192), Expect = 4e-38 Identities = 166/210 (79%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTC 210964 ||||||||||| || |||||||| |||||||| || || | ||| || | ||| ||||| Sbjct 62102 ACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAA-AGTACGTCCGTCTTC 62160 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || ||||||||| || || || || ||||| |||||||| |||| ||||||||||||||| Sbjct 62161 CAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTG 62220 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||| || |||||||| ||||| | ||| || || || |||||||| || ||||| Sbjct 62221 AATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCTACATCGAGAGTTATAGTCTT 62280 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| | ||||| || || | |||||| Sbjct 62281 CCCCGTCAACGTCTTGACGAAGATCTGCAT 62310 Score = 174 bits (192), Expect = 4e-38 Identities = 166/210 (79%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTC 210964 ||||||||||| || ||||| || |||||||| || || | ||| || | ||| || || Sbjct 62558 ACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCACTCAA-AGTACGTCCGTCCTC 62616 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || ||||||||| || ||||| || ||||| || ||||| |||| ||||||||||||||| Sbjct 62617 CAACTGCTTGCCAGCAAAGATTAGACGTTGCTGATCAGGGGGAATTCCTTCCTTGTCCTG 62676 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||| || |||||||| ||||| | ||| || || || |||||||| || ||||| Sbjct 62677 AATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCCACATCGAGAGTTATAGTCTT 62736 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| | |||||| || || | |||||| Sbjct 62737 TCCCGTCAAAGTCTTGACGAAAATCTGCAT 62766 >seq55 Length=263441 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || ||||| || || || ||||| || || || || ||||| | |||| |||||||| Sbjct 150833 ACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCCGCCAAAGTCCGGCCATCTTCG 150892 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||||||||| || ||||| || || || ||||| || |||| |||||||||||||| Sbjct 150893 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTGTCCTGA 150952 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || || ||||| || || || ||| | || ||| || || || || || || ||||| Sbjct 150953 ATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATGGTCTTG 151012 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || ||||| || || | ||||||||| Sbjct 151013 CCCGTCAGGGTCTTGACGAAAATCTGCATTTT 151044 >seq43 Length=290853 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||| ||||| || |||||||| | | |||||||| || |||||||| || ||||| Sbjct 97875 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 97934 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || |||||||| |||| ||||||||||||||||| || || || || || || Sbjct 97935 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGTCA 97994 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| |||| || ||| || || || || || ||||| ||||| | ||||| ||||| Sbjct 97995 ATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAAAA 98054 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 98055 ATCTGCAT 98062 >seq593 Length=12966 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||| ||||| || |||||||| | | |||||||| || |||||||| || ||||| Sbjct 9110 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 9169 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || |||||||| |||| ||||||||||||||||| || || || || || || Sbjct 9170 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGTCA 9229 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| |||| || ||| || || || || || ||||| ||||| | || || ||||| Sbjct 9230 ATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTTTTGACAAAA 9289 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 9290 ATCTGCAT 9297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159124034371295