Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq55 113 3e-20 seq157 111 1e-19 seq593 95.1 8e-15 seq43 89.7 3e-13 >seq55 Length=263441 Score = 113 bits (124), Expect = 3e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| || ||||| ||||| || || || || || || || || || Sbjct 151044 AAAATGCAGATTTTCGTCAAGACCCTGACGGGCAAGACCATTACGCTGGACGTGGAGCCC 150985 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| | |||| | | ||||| |||||| ||||| ||||| | || || || Sbjct 150984 TCGGATAGCATTGACAATGTCAAACAGAAAATTCAGGACAAGGAAGGGATTCCACCCGAC 150925 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || ||||| ||||| || || ||||| | || ||||| | || ||| Sbjct 150924 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGGACTTTGGCGGACTAC 150865 Query 23788 AACATACAAAAAGAGTCCAC 23807 || || || ||||| || || Sbjct 150864 AATATTCAGAAAGAATCGAC 150845 >seq157 Length=157498 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 || |||||||||||| || || || || |||||||| || |||||||| || ||||| | Sbjct 63226 TACAATGCAGATTTTTGTAAAGACGCTGACGGGAAAGACAATCACTCTTGATGTTGAGCC 63167 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||| | | || | | || || || ||| ||||| ||||| | || || || Sbjct 63166 TTCCGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGA 63107 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || ||| |||| ||||||||||| || |||| |||| || || || |||| || Sbjct 63106 CCAGCAACGTCTAATCTTTGCCGGCAAGCAGTTGGAGGACGGTCGTACGTTGAGCGACTA 63047 Query 23787 CAACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 63046 TAACATTCAGAAAGAGTCGAC 63026 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | |||||||| || || |||||||| || || | | Sbjct 62766 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACTATAACTCTCGATGTGGAGCCTTCC 62707 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | | || | | || || || ||| ||||| ||||| | || || ||||| Sbjct 62706 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGATCAG 62647 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| |||| ||||| ||||| || |||| |||| ||| ||||| | || |||||| Sbjct 62646 CAACGTCTAATCTTTGCTGGCAAGCAGTTGGAGGACGGACGTACTTTGAGTGACTACAAC 62587 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 62586 ATCCAGAAGGAGTCGAC 62570 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | |||||||| || || |||||||| || || | | Sbjct 62538 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACTATAACTCTCGACGTAGAGCCTTCT 62479 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | | || | | || || || ||| ||||| ||||| | || || || || Sbjct 62478 GACTCGATCGATAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAG 62419 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| |||| ||||| ||||| || |||| |||| ||| ||| | |||| |||||| Sbjct 62418 CAACGTCTAATCTTTGCTGGCAAGCAGTTGGAGGACGGACGTACTCTGAGCGACTACAAC 62359 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 62358 ATCCAGAAGGAGTCGAC 62342 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | |||||||| || |||||||| || ||||| | | Sbjct 62994 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCT 62935 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | | || | | || || || ||| ||||| ||||| | || || || || Sbjct 62934 GACTCGATCGATAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCAG 62875 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| ||||| || |||| |||| || ||| | |||| |||||| Sbjct 62874 CAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAAC 62815 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 62814 ATCCAGAAAGAGTCGAC 62798 >seq593 Length=12966 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| | ||||| || || || || || || || || | | Sbjct 9297 ATGCAGATTTTTGTCAAAACGTTGACGGGCAAGACCATTACGCTGGACGTGGAACCGTCA 9238 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||| |||| | |||| || ||||| ||||| ||||| | ||||| || || Sbjct 9237 GACAGCATTGACAATGTAAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 9178 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 |||||||| || ||||| ||||| ||||| ||||| | || ||||| | || |||| Sbjct 9177 CAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTTCACTT--GCGGACTACA 9120 Query 23789 ACATACAAAA 23798 |||| ||||| Sbjct 9119 ACATTCAAAA 9110 >seq43 Length=290853 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | ||||| || || || || || || || || | | Sbjct 98062 ATGCAGATTTTTGTCAAGACGTTGACGGGCAAGACCATTACGCTGGACGTGGAACCGTCA 98003 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||| |||| | |||| || ||||| ||||| ||||| | ||||| || || Sbjct 98002 GACAGCATTGACAATGTAAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 97943 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 |||||||| || ||||| ||||| ||||| ||||| | || ||||| | || |||| Sbjct 97942 CAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTTCACTT--GCGGACTACA 97885 Query 23789 ACATACAAAA 23798 |||| ||||| Sbjct 97884 ACATTCAAAA 97875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338001842996564