Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq427 208 2e-48 seq55 167 6e-36 seq157 143 6e-29 seq593 136 9e-27 seq43 132 1e-25 seq47 95.1 3e-14 seq356 91.5 4e-13 >seq427 Length=39484 Score = 208 bits (230), Expect = 2e-48 Identities = 219/288 (76%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| ||| | ||| || | ||||||| || ||| | | Sbjct 13128 AACTTTATATTTAATTTTTAGTGCTTTTGCCGGTGTTGTTGGTACTACTTTATCTCTTTT 13187 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 ||||| |||||||||| || ||| |||||| || | || ||| ||| | || Sbjct 13188 AATAAGAATAGAATTAGCACAACCCGGTAATCAAATTTTTATGGGAAATCATCAATTATA 13247 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 ||| ||| || |||| || ||||| ||||| ||| | || ||||| |||||||||| | Sbjct 13248 CAATGTTGTTGTTACAGCACATGCTTTTGTAATGGTATTTTTTTTAGTTATGCCGGCGTT 13307 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || |||||||| || ||||| || |||||||||||||||||||||||||||||||| || Sbjct 13308 AATTGGCGGTTTTGGTAATTGGTTTGTTCCTTTAATGATTGGTGCTCCTGATATGGCATT 13367 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||| | | || |||||||||||||| ||| |||| || | ||||| Sbjct 13368 TCCTCGTATGAATAATATAAGTTTTTGGTTATTACCTCCAGCATTATT 13415 Score = 116 bits (128), Expect = 9e-21 Identities = 89/104 (86%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| |||||||||||||| || |||||||||||||| | | ||||||||| |||||||| Sbjct 13812 TTCTGGATGACCAAAAAACCAAAATAAATGTTGATATAATACAGGATCGCCGCCGCCTGA 13753 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||| |||| ||| || ||||||||||||||||| |||| Sbjct 13752 TGGATCATAAAATGAAGTGTTTAAATTTCTATCAGTTAATAACA 13709 Score = 113 bits (124), Expect = 1e-19 Identities = 89/104 (86%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| |||||||||||||||||||||||||| | |||||||| | ||| | || ||||| Sbjct 10064 TTGAAAGAATGATCAGCCACATTGGGACTGAGATACGGCCCA-GACTTTTTTAAAGGCAG 10006 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 10005 CAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 9962 Score = 113 bits (124), Expect = 1e-19 Identities = 136/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||| | |||| | | |||||| ||| ||||||||||| | || || | ||||| Sbjct 13634 AACGGTAGTCTATGAAAACTTAAACCTGGTGCTCTCATATTATAAATTGTCGATATAAAA 13575 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || || || |||| | ||| || ||||||| | |||||||||||| ||||||||||| Sbjct 13574 TTAATTGCACCTAATAAAGATGAAATACCTGTTAAATGTAAACTAAAAATTGCTAAATCT 13515 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || || || || |||| | || ||| || ||||||||||| || ||| Sbjct 13514 ACTGAAGGTCCTGAATGTGCTTGTACACTTGA---TAATGGGGGGTAAACTGTCCAACCG 13458 Query 371542 GTTC 371545 |||| Sbjct 13457 GTTC 13454 Score = 100 bits (110), Expect = 7e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTG 372682 |||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | | Sbjct 4901 AGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGG 4960 Query 372683 TAAAACGATGTATAGGGTCTGACAC 372707 ||| | ||||||||||||||||||| Sbjct 4961 TAACATGATGTATAGGGTCTGACAC 4985 Score = 100 bits (110), Expect = 7e-16 Identities = 102/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 9397 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 9456 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| || |||||| | || | ||||| ||| | || Sbjct 9457 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 9516 Query 7850 TACGCGTTAGCT 7861 ||||||||||| Sbjct 9517 AACGCGTTAGCT 9528 >seq55 Length=263441 Score = 167 bits (184), Expect = 6e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || ||||| || || |||||||| || | |||||| || |||||||| Sbjct 150820 ACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCCGCCAAAGT 150879 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||| ||||| || || || |||||||| ||||| || Sbjct 150880 CCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCC 150939 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || || || || || ||| || ||| | || |||| |||||||| | Sbjct 150940 TTCCTTGTCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACGTCCAG 150999 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||| || ||||||||||||| || || | ||| | |||||||| Sbjct 151000 CGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCATTTT 151044 >seq157 Length=157498 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || ||||||||||| || || || || |||| ||||| ||| || ||| Sbjct 62317 ACGCAGACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGT 62376 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || | |||||| ||||| ||||| || ||||| ||||| || ||||| || Sbjct 62377 ACGTCCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGGTCAGGTGGAATTCC 62436 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| |||||||| ||||| | ||| || | || ||||| | Sbjct 62437 TTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCTACGTCGAG 62496 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| ||||||||||| || | ||| | ||||| Sbjct 62497 AGTTATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62538 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || |||||||| || || || ||||| |||| ||||| ||| || ||| Sbjct 62773 ACGCAGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGT 62832 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || | |||||| ||||| || || || ||||| ||||| || ||||| || Sbjct 62833 ACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCC 62892 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| |||||||| ||||| | ||| || | || ||||| | Sbjct 62893 TTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCAACGTCAAG 62952 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| ||||||||||| || | ||| | ||||| Sbjct 62953 AGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62994 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || |||||||| || || || ||||| |||| ||||| ||| |||||| Sbjct 62089 ACGCAGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGT 62148 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | |||||| ||||| || || || ||||| ||||| || ||||| || Sbjct 62149 ACGTCCGTCTTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCC 62208 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| |||||||| ||||| | ||| || | || || || | Sbjct 62209 TTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCTACATCGAG 62268 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| |||||||| || || | ||| | ||||| Sbjct 62269 AGTTATAGTCTTCCCCGTCAACGTCTTGACGAAGATCTGCAT 62310 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || |||||||| || || || || || |||| ||||| || |||||| Sbjct 62545 ACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCACTCAAAGT 62604 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || | |||||| ||||| ||||| || ||||| || || || ||||| || Sbjct 62605 ACGTCCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGATCAGGGGGAATTCC 62664 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| |||||||| ||||| | ||| || | ||||| || | Sbjct 62665 TTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCCACATCGAG 62724 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| ||||||||||| || | ||| | ||||| Sbjct 62725 AGTTATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62766 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || ||||||||||| || || ||||| || | || || ||| ||| || Sbjct 63001 ACGCAGACGCAACACAAGGTGGAGGGTCGACTCTTTCTGAATGTTATAGTCGCTCAACGT 63060 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || | |||||| || || ||||| || ||||| ||||| || ||||| || Sbjct 63061 ACGACCGTCCTCCAACTGCTTGCCGGCAAAGATTAGACGTTGCTGGTCAGGGGGAATTCC 63120 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| |||||||| ||||| | ||| || | || || || | Sbjct 63121 TTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACATCAAG 63180 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTAT 225718 ||||| ||||| ||||||| || |||| || | |||||| ||| Sbjct 63181 AGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCATTGTAT 63227 >seq593 Length=12966 Score = 136 bits (150), Expect = 9e-27 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| || ||||| ||||| ||||| | || || ||||| |||||||| |||||| Sbjct 9140 CCATCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGCGGAATGCCTTCC 9199 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| ||||||| | ||||||||| | ||| Sbjct 9200 TTGTCCTGGATTTTCTGCTTTACATTGTCAATGCTGTCTGACGGTTCCACGTCCAGCGTA 9259 Query 225676 ATCGTCTTGCCCGTCAAAGTTTT 225698 || |||||||||||||| ||||| Sbjct 9260 ATGGTCTTGCCCGTCAACGTTTT 9282 >seq43 Length=290853 Score = 132 bits (146), Expect = 1e-25 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| || ||||| ||||| ||||| | || || ||||| |||||||| |||||| Sbjct 97905 CCATCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGCGGAATGCCTTCC 97964 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| ||||||| | ||||||||| | ||| Sbjct 97965 TTGTCCTGGATTTTCTGCTTTACATTGTCAATGCTGTCTGACGGTTCCACGTCCAGCGTA 98024 Query 225676 ATCGTCTTGCCCGTCAAAGTTTT 225698 || |||||||||||||| || || Sbjct 98025 ATGGTCTTGCCCGTCAACGTCTT 98047 >seq47 Length=279382 Score = 95.1 bits (104), Expect = 3e-14 Identities = 98/127 (77%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| |||| ||||| || ||||||||||||| ||||||||||| | | | Sbjct 79048 TGGTAAGGTTCTGCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 78989 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854 |||||| || ||||||||||||| |||||| |||| | | |||| ||| | || | || Sbjct 78988 CCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGGAGTGCTTAATGC 78929 Query 7855 GTTAGCT 7861 ||||||| Sbjct 78928 GTTAGCT 78922 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/95 (83%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||||||||||||| | ||||||||| || ||| | ||||| Sbjct 78384 TGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAA-ACTCCTACGGGAGGCAG 78442 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGA 6860 |||||| |||| || |||||||||||||| ||| Sbjct 78443 CAGTGGGGAATCTTGCGCAATGGGCGAAAGCCTGA 78477 >seq356 Length=60433 Score = 91.5 bits (100), Expect = 4e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 372630 ACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACG 372689 ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | |||| | | Sbjct 60122 ACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGGTAACATG 60181 Query 372690 ATGTATAGGGTCTGACAC 372707 |||||||||||||||||| Sbjct 60182 ATGTATAGGGTCTGACAC 60199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192502429066802