Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 167 2e-36 >seq1 Length=763219 Score = 167 bits (184), Expect = 2e-36 Identities = 391/586 (67%), Gaps = 8/586 (1%) Strand=Plus/Plus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599 |||| | |||||||| || |||| ||| ||||| | |||||| || ||||| |||| Sbjct 607172 ACAAAAGGCACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAA 607231 Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAG 4659 | ||| || ||||||||||| | ||| || |||||||| || | | ||||| |||| Sbjct 607232 AGCTTAGACCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGGAGCAGAATGAGCCAG 607291 Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCG----GGACCCGAACGAGCTG 4715 | || || |||||||| || || ||||| || | | || ||| ||| ||| Sbjct 607292 AGAAAAAAATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAA-GAGAC- 607349 Query 4716 GCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTG 4775 | || | | ||| || | ||||||| |||||||| | ||||| || || || Sbjct 607350 -CCGTGGATCGCA-CCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTC 607407 Query 4776 TATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGT 4835 | ||||| | || | || |||| | ||||| |||||| ||||| || | Sbjct 607408 TCGATAGCACGTAGTAGATGGTCCTTCTCAATCGCGTCTTTAATATACGTGTCAATCAAA 607467 Query 4836 AGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTA 4895 || |||| ||| || |||||||| || || || || ||||| ||||||||||| | | Sbjct 607468 AGCGAGTACACTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGA 607527 Query 4896 GCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCG 4955 || |||| || || |||||||| | ||| | ||| ||||| || || || ||| Sbjct 607528 GCCTCTGGCACCTGCACTTCGTTGCTAAAATTCATGGCTAGATTTTCATTCACAATGCCG 607587 Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT 5015 ||||| || ||||| || || | ||||| || || || | |||| | | || Sbjct 607588 TCACTAGCAGCAAAGAAAGCGAGCACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGG 607647 Query 5016 TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 | ||| | || ||| | | ||| | ||| ||| | |||||||| || ||| Sbjct 607648 CTAGCCCAATCTTTCAGATCGTGCACCAGATCGAGTTCCTCAGCTGTCCAAAAAGAAGCT 607707 Query 5076 TCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAA 5121 || ||||| |||||||| ||| | || | | |||||| |||| Sbjct 607708 TCAGCTTTCTTGTACATCTGCCACACTTCGTGCTCCTGAATGGGAA 607753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427039799612039