Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 168 9e-37 >seq1 Length=763219 Score = 168 bits (186), Expect = 9e-37 Identities = 361/534 (68%), Gaps = 9/534 (2%) Strand=Plus/Plus Query 48161 ACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTT 48220 ||| || || | ||||| | ||||| ||||| | ||||| ||||||| || || || Sbjct 607200 ACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGACCAGGCATTAAACCGCGCTT 607259 Query 48221 TTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAA 48280 ||||||||||| || | ||| || ||||| || || |||||||| || || ||||| Sbjct 607260 CTTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGAAAAAAATGCCTTCAACTGCAGCAAA 607319 Query 48281 TGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATC-CACCGTT---GTGCCCAAT 48336 || ||| | ||| || | | ||| ||| |||| | | ||||| | Sbjct 607320 GGCCAAAAGCCGTTCTGGATAGGAAGAGACCC-GTGGATCGCACCACTTCAGAGCCCAGT 607378 Query 48337 CAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCAT 48396 || || || | || ||||| || || || |||||| | ||| || || ||| Sbjct 607379 GCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCACGTAGTAGATGGTCCTTCTCAA 607438 Query 48397 TGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAA 48456 | ||||||| || || || || ||||| |||| ||| ||||| ||||| || | Sbjct 607439 TCGCGTCTTTAATATACGTGTCAATCAAAAGCGAGTACACTTCCGAGTGTATATTCTCGA 607498 Query 48457 TTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATC 48516 |||| || ||||| |||||||| || | || |||| | ||| || || | | ||| Sbjct 607499 TTGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCTGGCACCTGCACTTCGTTGCTAAAA- 607557 Query 48517 GTTCA--GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATG 48574 |||| || | ||| ||||| || || || |||||||||||||| || || | ||||| Sbjct 607558 -TTCATGGCTAGATTTTCATTCACAATGCCGTCACTAGCAGCAAAGAAAGCGAGCACATG 607616 Query 48575 TTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATAT 48634 ||||| ||||| |||||| || || || ||| || || | ||| | | Sbjct 607617 CTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAGCCCAATCTTTCAGATCGTGCACCAG 607676 Query 48635 ATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCA 48688 ||| | ||| |||||||||||||| || || || ||||| || ||||| | ||| Sbjct 607677 ATCGAGTTCCTCAGCTGTCCAAAAAGAAGCTTCAGCTTTCTTGTACATCTGCCA 607730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694652449233120