Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 154 2e-32 >seq1 Length=763219 Score = 154 bits (170), Expect = 2e-32 Identities = 378/566 (67%), Gaps = 9/566 (2%) Strand=Plus/Plus Query 46663 CTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAAT 46722 ||||| | ||||| ||||| | || |||||||||| || ||||| ||||||||||| Sbjct 607213 CTAATAAGCTCGTTTGAAAAGCTTAGACCAGGCATTAAACCGCGCTTCTTGAGCCAAAAG 607272 Query 46723 ATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTC 46782 || | ||| || ||||| || || |||||||| || || || || || | ||| | Sbjct 607273 ATGGAGCAGAATGAGCCAGAGAAAAAAATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGT 607332 Query 46783 TCTCCGTAACTGGC-ATCATT--ATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTT 46839 ||| || | | | | || |||| | ||||||| | || ||||| | Sbjct 607333 TCTGGATAGGAAGAGACCCGTGGATCGCACCACTTCAGAGCCCAGTGCGCTTTTTTGGTG 607392 Query 46840 ACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCA-TCACTATCTTTAAC 46898 || ||||| || || || |||||| | ||| || || ||| || | ||||||| Sbjct 607393 ACGCAAGGGATAGTCTCGATAGCACGTAGTAGATGGTCCTTCTCAATCGCG-TCTTTAAT 607451 Query 46899 ATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAA 46958 ||| || || || ||||| |||| ||| || || || || || || || || ||||| Sbjct 607452 ATACGTGTCAATCAAAAGCGAGTACACTTCCGAGTGTATATTCTCGATTGCGATTTGAAA 607511 Query 46959 TCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA--GACAAA 47016 |||||||| || | || || | | ||| || || | | ||| |||| | | | Sbjct 607512 CCCGTAAAAGCAGCGAGCCTCTGGCACCTGCACTTCGTTGCTAAAA--TTCATGGCTAGA 607569 Query 47017 TTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATAT 47076 || |||||||| || || |||||||||||||| || || | ||||| ||||| ||||| Sbjct 607570 TTTTCATTCACAATGCCGTCACTAGCAGCAAAGAAAGCGAGCACATGCTTAATGAAATAA 607629 Query 47077 TTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 47136 || | | || || || ||| || || | ||| | | ||| | ||| ||| Sbjct 607630 CGCTCGTTGTCCGTGAGGCTAGCCCAATCTTTCAGATCGTGCACCAGATCGAGTTCCTCA 607689 Query 47137 GCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATC 47196 |||||||| || || || || ||||| || ||||| | ||| | || | | || || Sbjct 607690 GCTGTCCAAAAAGAAGCTTCAGCTTTCTTGTACATCTGCCACACTTCGTGCTCCTGAATG 607749 Query 47197 GGAAAAATAACAAATCTATTTGGATT 47222 ||||| | ||||| | ||| | ||| Sbjct 607750 GGAAAGAGCACAAAGCGATTGGAATT 607775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712917619306560