Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq157 116 9e-21 >seq157 Length=157498 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||| ||||| || |||||||| ||||||||||| ||| ||||| | || ||||| Sbjct 62102 ACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTACGTCCGTCTTCC 62161 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || || || || || | |||||||| | | ||||||||||| || ||| Sbjct 62162 AACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGA 62221 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || || || || | || | ||| ||| |||||| || ||||| ||||| || Sbjct 62222 ATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCTACATCGAGAGTTATAGTCTTC 62281 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| | ||||| ||||||| |||||| Sbjct 62282 CCCGTCAACGTCTTGACGAAGATCTGCAT 62310 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||| || || || ||||| || ||||||||||| ||| | ||| | || || || Sbjct 62330 ACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCGTCCTCC 62389 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || || ||||| || | |||||||| | | ||||||||||| || ||| Sbjct 62390 AACTGCTTGCCAGCAAAGATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGA 62449 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || || || || | || | ||| ||| |||||| || ||||| ||||| || Sbjct 62450 ATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCTACGTCGAGAGTTATAGTCTTT 62509 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| | |||||| ||||| | |||||| Sbjct 62510 CCCGTCAAAGTCTTGACGAAAATCTGCAT 62538 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||| ||||| || |||||||| ||||||||||| ||| | ||| | || || || Sbjct 62786 ACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCC 62845 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || || || || || | |||||||| | | ||||||||||| || ||| Sbjct 62846 AACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGA 62905 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || || || || | || | ||| ||| ||| || |||||||| || || || Sbjct 62906 ATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCAACGTCAAGAGTGATTGTCTTT 62965 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| | |||||| ||||| | |||||| Sbjct 62966 CCCGTCAAAGTCTTGACGAAAATCTGCAT 62994 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||| ||||| || ||||| || ||||||||||| || ||||| | || || || Sbjct 62558 ACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCACTCAAAGTACGTCCGTCCTCC 62617 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || || ||||| || | ||||| || | | ||||||||||| || ||| Sbjct 62618 AACTGCTTGCCAGCAAAGATTAGACGTTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGA 62677 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || || || || | || | ||| ||| ||| || || ||||| ||||| || Sbjct 62678 ATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCCACATCGAGAGTTATAGTCTTT 62737 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| | |||||| ||||| | |||||| Sbjct 62738 CCCGTCAAAGTCTTGACGAAAATCTGCAT 62766 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||| || || || |||||||| || ||||| || ||| || || | || || || Sbjct 63014 ACAAGGTGGAGGGTCGACTCTTTCTGAATGTTATAGTCGCTCAACGTACGACCGTCCTCC 63073 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || ||||| ||||| || | |||||||| | | ||||||||||| || ||| Sbjct 63074 AACTGCTTGCCGGCAAAGATTAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGA 63133 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || || || || | || | ||| ||| ||| || |||||||| || || || Sbjct 63134 ATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACATCAAGAGTGATTGTCTTT 63193 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 ||||| || ||||| || || | ||||||| || Sbjct 63194 CCCGTCAGCGTCTTTACAAAAATCTGCATTGTA 63226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153792962991493