Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq55 145 2e-29 seq157 140 8e-28 >seq55 Length=263441 Score = 145 bits (160), Expect = 2e-29 Identities = 164/219 (75%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| || || || || || || || || || || || ||||| Sbjct 151044 AAAATGC---AGATTTTCGTCAAGACCCTGACGGGCAAGACCATTACGCTGGACGTGGAG 150988 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| || | ||| || || |||||||| || ||||||||||| ||||| || || || Sbjct 150987 CCCTCGGATAGCATTGACAATGTCAAACAGAAAATTCAGGACAAGGAAGGGATTCCACCC 150928 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || || ||||| || || || |||||||||||||| ||||| | || || Sbjct 150927 GACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGGACTTTGGCGGAC 150868 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || | || |||||||| || ||||| || || ||| Sbjct 150867 TACAATATTCAGAAAGAATCGACGCTGCACCTCGTGTTG 150829 >seq157 Length=157498 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | || ||||| || || || ||||| || || || ||| Sbjct 62535 CAGATTTTCGTCAAGACTTTGACGGGAAAGACTATAACTCTCGACGTAGAGCCTTCTGAC 62476 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| |||||||| || || ||||||||| Sbjct 62475 TCGATCGATAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAGCAA 62416 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||| | || || ||| | ||||| ||| || ||| || Sbjct 62415 CGTCTAATCTTTGCTGGCAAGCAGTTGGAGGACGGACGTACTCTGAGCGACTACAACATC 62356 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || || || || ||||| ||| Sbjct 62355 CAGAAGGAGTCGACCCTCCACCTTGTGTTG 62326 Score = 136 bits (150), Expect = 1e-26 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | || ||||| || ||||| || || || || || ||| Sbjct 62991 CAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCTGAC 62932 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| |||||||| || || ||||||||| Sbjct 62931 TCGATCGATAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCAGCAA 62872 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||| | || || || | ||||| ||| || ||| || Sbjct 62871 CGTCTCATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAACATC 62812 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||||| || || || || ||||| ||| Sbjct 62811 CAGAAAGAGTCGACCCTTCACCTTGTGTTG 62782 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | || ||||| || || || ||||| ||||| || ||| Sbjct 62763 CAGATTTTCGTCAAGACTTTGACGGGAAAGACTATAACTCTCGATGTGGAGCCTTCCGAC 62704 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| |||||||| || || || |||||| Sbjct 62703 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGATCAGCAA 62644 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||| | || || ||| | ||| | || || ||| || Sbjct 62643 CGTCTAATCTTTGCTGGCAAGCAGTTGGAGGACGGACGTACTTTGAGTGACTACAACATC 62584 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || || || || ||||| ||| Sbjct 62583 CAGAAGGAGTCGACCCTTCACCTTGTGTTG 62554 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || || || ||||| || ||||| || || || || || ||| Sbjct 63219 CAGATTTTTGTAAAGACGCTGACGGGAAAGACAATCACTCTTGATGTTGAGCCTTCCGAC 63160 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| |||||||| || || ||||||||| Sbjct 63159 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCAGCAA 63100 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||| | || || || | || | ||| |||||| | Sbjct 63099 CGTCTAATCTTTGCCGGCAAGCAGTTGGAGGACGGTCGTACGTTGAGCGACTATAACATT 63040 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||||| || || || || ||||| ||| Sbjct 63039 CAGAAAGAGTCGACCCTCCACCTTGTGTTG 63010 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || || || ||||| || || || ||| Sbjct 62307 CAGATCTTCGTCAAGACGTTGACGGGGAAGACTATAACTCTCGATGTAGAGCCTTCCGAC 62248 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| |||||||| || || ||||||||| Sbjct 62247 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCAGCAA 62188 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||| | ||||| ||| | ||| | ||| || ||| || Sbjct 62187 CGTCTCATTTTTGCTGGCAAGCAGTTGGAAGACGGACGTACTTTGAGCGACTACAACATC 62128 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||||| || || || || ||||| ||| Sbjct 62127 CAGAAAGAGTCGACCCTTCACCTTGTGTTG 62098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203702158856302