Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1435 147 5e-30 seq633 105 1e-17 seq1491 102 2e-16 seq2020 95.1 3e-14 seq1526 93.3 9e-14 seq845 93.3 9e-14 seq1946 86.0 1e-11 seq126 86.0 1e-11 seq92 86.0 1e-11 seq25 84.2 5e-11 >seq1435 Length=478137 Score = 147 bits (162), Expect = 5e-30 Identities = 477/722 (66%), Gaps = 29/722 (4%) Strand=Plus/Plus Query 292135 TTCTACAATTGCTCCGATGATATCTTGAGGCACTCCCTCGAAATTAGCCAGCAGTTGCTT 292194 |||||||||||| | |||||| | | ||| || | | || |||| |||||||| Sbjct 84439 TTCTACAATTGCGCTGATGATGTTGTTAGGGACGTTGTTATAGTTGGCCAAGAGTTGCTT 84498 Query 292195 CGTATCCTTTGGAAAGCAATAAGCTCCATAACCGAACGAAGGGTTTGAGTACCCCTGACC 292254 |||||||| || | ||||||| | ||| ||||||| || ||||| ||| | || Sbjct 84499 GGTATCCTTGGGCAGGCAATAACCACCAAAACCGAATGAGGGGTTGTTGTAGTAATTGCC 84558 Query 292255 AATGCGAGGCTCCAGAGTCACACCATCAATGATTTCTTTCGC-ATTC-ATACCGTGAGAC 292312 |||||| || |||| || || || || || || || | || | || | | Sbjct 84559 AATGCGGGGATCCATGCAGACGCCTTCGATAAT--CTGACGGGAGTCTAGGCCCAGGG-- 84614 Query 292313 ATTGC-GAAT--GTATCTAGTTCGTTGAAGTATGCAACTCGCATTGCAAGATACGTGTTA 292369 |||| | || || || |||||||||||||| || || ||||| || ||||| |||| Sbjct 84615 -TTGCAGCATAGGTGTCGAGTTCGTTGAAGTAGGCGACACGCATGGCGAGATAGCTGTTG 84673 Query 292370 GAGAATAGTTTGACGGCCTCGGCTTCGCGAGTTCCCATCGTCAGGACAGGGGCAAGCGGA 292429 ||||| ||||| ||||| || ||||| || | | | || | | | || | | Sbjct 84674 GAGAAGAGTTTAACGGCTTCTGCTTCAGTAGGTTCGGT-GT-ATAAAACGGCAATGTTTT 84731 Query 292430 GTTT--TAGAACCTTCAACGAGAAGGTTTGCGAACTTAA--GCGCAATGGGGGAATCAT- 292484 | || ||| ||||| | |||| || || || |||| | | ||| | Sbjct 84732 GCTTGATAGCGCCTTCTTGCAAAAGGGCGGCAAATTTTTCGGCGC---GCGCAGATCTTT 84788 Query 292485 CTCCTACGATGATACGGGATGGGTAGAGATTATCATACAAGGCTCTACCTTCACGCAGAA 292544 |||||| |||||| |||||||| | ||| || ||||||| |||| ||||||| ||||||| Sbjct 84789 CTCCTATGATGATGCGGGATGGATGGAGGTTGTCATACAGGGCTTTACCTTCTCGCAGAA 84848 Query 292545 ATTCTGGGGAGAAAATGATATTTTGGTAGTCGAAT-TGCTCACGAACCTTAT-CAACAAA 292602 |||| || ||||| |||||||| || || || | | | || ||| | | Sbjct 84849 ATTCAGGAGAGAAGATGATATTGGGGCTGTTGAGTGTAGTTTTGA--TATATGCGGTGTA 84906 Query 292603 TCCAATGGGGATGGTAGATTTAATCACGATAGTTGGATGGGTCTGTGTATTTTTG-ATCA 292661 |||| ||| | ||| ||||||||||| ||||| | || || || | ||| |||| Sbjct 84907 GCCAACGGGAACGGTGGATTTAATCACCATAGT----CGCGTTTGGGTTGTATTGCATCA 84962 Query 292662 CGTCCCCAATGACGTTTTCCACAGATTTCGTGTTAAAATACCTAGTAACCACGTCATAGT 292721 |||| || ||| ||| | || | || ||||| || |||| | ||| |||| Sbjct 84963 CGTCTTTGATAACGGCTTCAATGGAGCTGGTATTAAAGTAGTTAGTCTCAGGGTCGTAGT 85022 Query 292722 CAGTCGGGGTTGCGATGATGACAAATTCGGCGTTTTCGTATGCAAGAACCTTGTCAGTCG 292781 | || ||||| || || | ||||| || || |||||| || ||||| || Sbjct 85023 CGGTGGGGGTAGCAATCACCACAAACTCAGCACCTTCGTAGGCTTCTTTTTTGTCCAGCG 85082 Query 292782 TCGCGGTCAGGTTCAGGTCTTTCGTTTCGAGAAACTCTTCGATTTCCTTGTCCTCGATTG 292841 | ||| | ||| || |||| ||| | | |||||||||| || ||||| || |||| Sbjct 85083 TTGCGCGAAAGTTAAGTGCTTTTGTTGCCAAGTACTCTTCGATCTCTTTGTCTTCAATTG 85142 Query 292842 GA 292843 || Sbjct 85143 GA 85144 Score = 84.2 bits (92), Expect = 5e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 54080 CCAGTTGCCTTTGAGGGAGCGTTGAAGCTCAAAGAAATCTCTTACATTCATGCAGAGGGC 54139 ||| | || || ||||| ||| | ||||| |||||||||||||| |||||||| |||| | Sbjct 468947 CCAATAGCATTAGAGGGTGCGCTAAAGCTAAAAGAAATCTCTTATATTCATGCTGAGGCC 469006 Query 54140 T-TCCTGGGAGGTGAGTTGAAACACGGCCCCCTCGCACTCCTTGATGACAAGATTCCTGT 54198 | |||| | ||||| |||||||| ||||| | ||| | | ||||| | || ||||| Sbjct 469007 TATCCT-GCTGGTGAATTGAAACATGGCCCTTTGGCATTAGTCGATGAAGAAATGCCTGT 469065 >seq633 Length=73390 Score = 105 bits (116), Expect = 1e-17 Identities = 66/71 (93%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| Sbjct 29606 CCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCCTAATCTTGTGGTCGTGGGTTCGAGCC 29665 Query 165771 CCACGATGGGC 165781 ||||| ||||| Sbjct 29666 CCACGGTGGGC 29676 >seq1491 Length=35835 Score = 102 bits (112), Expect = 2e-16 Identities = 141/196 (72%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||||||||||||||| || ||||||| || || |||||||| | ||| ||| || Sbjct 25670 CTCTTTGTCTTCACCAGACTGGAAACGCCACTGAATGTACTGGTTCGCAGTCTCGTCGAG 25729 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||| ||||||||||| ||||| || |||| |||||| || || Sbjct 25730 GTGCGACTCAATGTGGTGAAAAGCATGCTGAGCCACATAGGCAAAACGCATGGAAGGGTG 25789 Query 319110 CTTCCAAACACTACCGA-TGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGC 319168 ||||| || ||| | |||| | || | || ||||| |||| ||| || || || Sbjct 25790 TTTCCACACCTGACCCACTGGTCGGCTCTACTTCACCCGTCAGCATCTTGATAAGCGTCG 25849 Query 319169 TTTTCCCCGCACCGTT 319184 || || |||||||| Sbjct 25850 ACTTACCAGCACCGTT 25865 >seq2020 Length=64988 Score = 95.1 bits (104), Expect = 3e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 |||| ||||||||||||||| |||||||||| | ||||||| | |||||||||||||| Sbjct 61772 GCTTACCCGTCTAGCTCAGTTGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTC 61831 Query 165766 GAGCCCCACGATGGG 165780 ||||||||||| ||| Sbjct 61832 GAGCCCCACGAGGGG 61846 >seq1526 Length=132622 Score = 93.3 bits (102), Expect = 9e-14 Identities = 206/302 (68%), Gaps = 13/302 (4%) Strand=Plus/Minus Query 230383 CAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGT 230442 || |||||||| ||||| || | | ||| |||| ||| | || || | || || Sbjct 118636 CACATCATTACGGAAGCTGTCAAGATTGAACAGGAATTCCTGACGGAGGCCTTGCCC-GT 118578 Query 230443 CGCCTT-ATTGGCATGAA---CGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGA 230498 || || ||||||||||| |||| || ||| | |||||||| ||||| || || || Sbjct 118577 TGCTTTGATTGGCATGAATTGCGCT---CTCATGTGCCAGTACATTGAATTTGTTGCTGA 118521 Query 230499 CCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTA-AGAACCCCTTTGCAT 230557 ||| | || ||||| || | | ||| | ||||| | || | || || || | | Sbjct 118520 TCGCTTGTTGGTTGCCCTGCAGTGCCCCAAATTTTACAA-TGTAGACAATCCTTTCGATT 118462 Query 230558 TTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACT 230617 | ||||| | ||||| | ||||| ||||| |||||||| |||||| || |||| | Sbjct 118461 TCATGGACTTGATTTCCTTGCAAGGAAAGACTAACTTCTTTGAAAAGAAGGTTGGTGAGT 118402 Query 230618 ATCAGAGGCCTGGTGTGATGAAGCCCGAAGACAATATTTTTGCTATTGACGATGATTTTT 230677 | || | | ||||||| || | | |||| || ||||| || |||| | ||| |||| Sbjct 118401 ACCAAAAGGCTGGTGTCAT---GTCACAAGAAAAGATTTTCACTCTTGATGCTGACTTTT 118345 Query 230678 AA 230679 || Sbjct 118344 AA 118343 >seq845 Length=277277 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/75 (88%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT---CG 165766 ||||||| |||||||||||||||||| ||||| ||||||| ||||||||||||| || Sbjct 238561 GCCCGTCACGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGACG 238502 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 238501 AGCCCCACGGTGGGC 238487 >seq1946 Length=427495 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 284270 GCCCGGATAGCTCAGTCGGTAGAGCGTGAGACTTTTAATCTTAAGGTCGTGGGTTCGAGC 284211 Query 165770 CCCAC 165774 ||||| Sbjct 284210 CCCAC 284206 >seq126 Length=311165 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||||||||||| |||||||||| | ||||||| | ||||||||||||||||||| Sbjct 299094 CCCGTCTAGCTCAGTTGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 299153 Query 165771 CCACG 165775 ||||| Sbjct 299154 CCACG 299158 >seq92 Length=4047 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||||||||||| |||||||||| | ||||||| | ||||||||||||||||||| Sbjct 3146 CCCGTCTAGCTCAGTTGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 3205 Query 165771 CCACG 165775 ||||| Sbjct 3206 CCACG 3210 >seq25 Length=187441 Score = 84.2 bits (92), Expect = 5e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 165712 CCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCC 165771 ||||||||||||||||||||||| | ||||| || |||| || ||||||||||| |||| Sbjct 103737 CCGTCTAGCTCAGTCGGTAGAGCACAAGACTCTTCATCTTGTAGTCGTGGGTTCATGCCC 103796 Query 165772 CACGATGGG 165780 |||| |||| Sbjct 103797 CACGGTGGG 103805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057794656953950