Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq368 122 9e-23 >seq368 Length=262043 Score = 122 bits (134), Expect = 9e-23 Identities = 288/430 (67%), Gaps = 4/430 (1%) Strand=Plus/Plus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 |||||||| | ||| ||||| ||||| ||||| | | || ||||| || || ||| Sbjct 28308 CCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGACCAGGCATTAAACCGCGCTTC 28367 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | |||||| || | | ||| || ||||| || || || || || || | ||||| Sbjct 28368 TTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGAAAAAAATGCCTTCAACTGCAGCAAAG 28427 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTT-TGTTACGAATCCATTTCTGCACCCACTC 17163 || | | ||||| | || | | | | || || | ||| ||| | |||| | Sbjct 28428 GCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGATCGCA-CCACTTCAGAGCCCAGTG 28486 Query 17164 GGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTG 17223 ||||||| | | |||| || || || || || | || | || || || Sbjct 28487 CGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCACGTAGTAGATGGTCCTTCTCAAT 28546 Query 17224 TAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCAT 17283 ||| | |||||||| || || | || ||||| ||| |||||||| ||||| || Sbjct 28547 CGCGTCTTTGATATACGTGTCAATCAAAAGCGAGTACACTTCCGAGTGTATATTCTCGAT 28606 Query 17284 GGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACG-TAGAATC 17342 || || ||||| ||||||||||| || || || | | || ||||| | || ||| Sbjct 28607 TGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCTGGCACCTGCACTTCGTTGCTAAAATT 28666 Query 17343 GTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCT 17402 | ||||||||||| |||||||||||||| || || || || || || | | ||||| Sbjct 28667 CATG-GCTAGATTTTCATTCACGATGCCGTCACTAGCAGCAAAGAAAGCGAGCACATGCT 28725 Query 17403 TAATGAAATA 17412 |||||||||| Sbjct 28726 TAATGAAATA 28735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517531593922200