Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1526 150 2e-31 seq368 122 9e-23 seq811 107 2e-18 >seq1526 Length=132622 Score = 150 bits (166), Expect = 2e-31 Identities = 570/883 (65%), Gaps = 16/883 (2%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||||||| |||| ||| ||||| ||||||||||| ||||| | || || || | Sbjct 118396 TTTGGTACTCACCAACCTTCTTTTCAAAGAAGTTAGTCTTTCCTTGCAAGGAAATCAAGT 118455 Query 15972 CCATAAAATCAAAGGGATTAG-TAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACT 16030 |||| ||||| || ||||| || | || || || | | || ||| | | Sbjct 118456 CCATGAAATCGAAAGGATTGTCTACATTGTAAAAT-TTGGGGCACTGCAGGGCAACCAAC 118514 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090 || | ||| || |||||||| || || || ||||| | ||||||| || || || | Sbjct 118515 AAGCGATCAGCAACAAATTCAATGTACTGGCACATGAGAGCGCAATTCATGCCAATCAAA 118574 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 || || | || | || | |||| ||||| ||| || ||||| ||||||| Sbjct 118575 GCAACGGGCAAGGCCTCCGTCAGGAATTCCTGTTCAATCTTGACAGCTTCCGTAATGATG 118634 Query 16151 TCGGTGGCTCGTGTT-TCAGACGGT---GTATGGTTTAGGTGTTTAAACATTAGACACGC 16206 | || | ||| ||||| || || || | ||| | || | | ||| || Sbjct 118635 TGAGTTA-TAGTGGCATCAGAAGGACGAGTGTGACGCAAGTGCCTGAATAACAAACAGGC 118693 Query 16207 GAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGG 16266 || || ||||| || |||||||| | |||||| ||||| ||||| || || || || || Sbjct 118694 AAAATCACAATGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAGAAGGTCAAACCGGG 118753 Query 16267 CATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACC 16326 ||| || || ||||| |||||||| || ||||||||||| || |||||||| ||||| Sbjct 118754 CATCAACCCGCGCTTCTTCAACCAGAAAATGGCAGCAAATGAACCGGAAAAGAAGATACC 118813 Query 16327 CTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC-ATCTTTATTACGAATCC 16385 || || | |||||||| | | |||| | | | ||| | || ||| ||||| Sbjct 118814 TTCCACGGCAGCAAAAGCAACAAGGCGTT-CTCCAAAACAGCTAGTTTGATTTTCAATCC 118872 Query 16386 ATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT--AAA 16443 | | |||| || | || | | |||| || || || ||||| || ||| Sbjct 118873 AACGCATAGCCCAGTCTCCCTTCTTGCGAACACAAGGGATGGTGTCAATGGCATTGAAAA 118932 Query 16444 CAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTC 16503 | || | | ||| | ||| || || |||||||| || | | ||||||||| Sbjct 118933 GGAATTTACGCTCAACTGGGTCACGA--ATGTAGGTATCAATGAGGAGAGAGTACATTTC 118990 Query 16504 TGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTG 16563 | ||| ||||| || || || || || || || ||||| ||||| || | | ||| Sbjct 118991 AGCGTGAATGTTTTCAATCATGATTTGGAACCCGTAAAAGCAACGAGCTTCTGGAACTTG 119050 Query 16564 TACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAA 16623 ||||| || || ||| ||| ||||| || ||||| ||| |||||||| Sbjct 119051 AACTTCTTGTGCGAAACGAGTAACCAAGTTTTCATTGACAATACCATCAGAGGCAGCAAA 119110 Query 16624 AAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAAT---ATGCCAATC 16680 || ||||| | | || || || ||| || || | | | ||||| Sbjct 119111 GAAAGCCAAAACACGAGAAACAAAGAATCGTTCATCGTTAGTCAACTTTTCGTCCCAATG 119170 Query 16681 TTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTT 16740 ||||| || ||||| | || |||||||| | ||||| ||| ||| | ||||| || Sbjct 119171 TTTTATGTCCTTGGAAAGGTCAACTTCTTCGGCAGTCCAGAAGGAAGCTTCAGCCTTCTT 119230 Query 16741 ATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACG 16783 || | || ||||||||| | || | |||||||| | |||| Sbjct 119231 GTAGAATTGCCAAATATCGTGATACTTGATGGGAAAGAGGACG 119273 >seq368 Length=262043 Score = 122 bits (134), Expect = 9e-23 Identities = 383/584 (66%), Gaps = 12/584 (2%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || ||||| ||||| || | || ||||| | ||| ||||| ||||| ||||| || Sbjct 28284 AGGCACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTT 28343 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | || |||||| || || ||||| | ||| || || | |||| ||||| || || || Sbjct 28344 AGACCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGG-AGCAGAATGAGCCAGAGAA 28402 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC-ATCTTTAT 16376 || || || ||||| | ||||| || | | ||||| | || | || | | | Sbjct 28403 AAAAATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGG 28462 Query 16377 TACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGG 16436 || | ||| ||| | |||| | ||||||| | | ||| || || || || | Sbjct 28463 ATCGCA-CCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAG 28521 Query 16437 CCTTAAACAATTTCTCTTTTTCCTGAATATCGATT---ATATACGTATCAATCAGTAAAC 16493 | | | | || || || ||| || | |||||||| ||||||| | Sbjct 28522 CACGTAGTAGATGGTCCTTCTC---AATCGCGTCTTTGATATACGTGTCAATCAAAAGCG 28578 Query 16494 TGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCT 16553 ||||| ||| |||||||| ||||| || || || ||||| || || ||||| ||||||| Sbjct 28579 AGTACACTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCT 28638 Query 16554 CCGCTATTTGTACTTCCACG-TAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCA 16612 | | | || ||||| | |||||| | || || || ||||||||||| |||||| Sbjct 28639 CTGGCACCTGCACTTCGTTGCTAAAATTCATG-GCTAGATTTTCATTCACGATGCCGTCA 28697 Query 16613 CTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATA 16672 || |||||||| || || | | |||||||||||||| |||| || || || Sbjct 28698 CTAGCAGCAAAGAAAGCGAGCACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTA 28757 Query 16673 TGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACT 16732 ||||||||| | ||| | | ||| | ||| || | ||||| || ||| | Sbjct 28758 GCCCAATCTTTCAGATCGTGCACCAGATCGAGTTCCTCAGCTGTCCAGAAAGAAGCTTCA 28817 Query 16733 GCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 || || || ||||| | ||| | || | | || |||||||| Sbjct 28818 GCTTTCTTGTACATCTGCCACACTTCGTGCTCCTGAATGGGAAA 28861 >seq811 Length=1194 Score = 107 bits (118), Expect = 2e-18 Identities = 237/352 (67%), Gaps = 5/352 (1%) Strand=Plus/Plus Query 16429 TTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAAT-ATCGATTATATACGTATCAATCA 16487 ||||| || |||||||||| || |||| | | | ||| | | || |||||||| | Sbjct 41 TTCTAAAGCATTAAACAATT-CTGTTTTCTCAGCTTCATCTTTAACGTAAGTATCAATTA 99 Query 16488 GTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATC 16547 |||| ||| |||| ||| ||||| || || ||||| || |||||||| | Sbjct 100 ATAAAGAATACGTTTCGCTGTGAATGTTTTCCATCATAATCTGGAAACCATAGAAAAACT 159 Query 16548 GAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATAC 16607 || || || ||| ||||| ||| || |||| ||| ||||| ||||| | Sbjct 160 TCGCTTCAGCATATTGAACTTCGTTTACAAAGTTCTCAGCCAAGTTTTCATTTACGATTC 219 Query 16608 CGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA 16667 ||||| || ||||| || || || || || |||||||||||| |||| || | | Sbjct 220 CGTCAGAAGCTGCAAAGAATGCTAAAATATGTTTAATGAAATATCTTTCATCGTCATTCA 279 Query 16668 G---AATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGC 16724 | ||| ||||||| | ||||||| | | ||| | |||||| | ||||| || | Sbjct 280 GTTTGTTATTCCAATCTGTCAAATCTTGGTGCAAATCGATTTCTTCAGCAGTCCAGAAAC 339 Query 16725 TAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 |||| | ||||||||| || ||||||||||| | || || ||||| Sbjct 340 TAGCTTCCATTTTTTTATACCATTCCCAAATATCATGATGTTTGATAGGAAA 391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511400559847800