Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1422 116 3e-21 seq1775 100 2e-16 seq1110 98.7 8e-16 seq1355 86.0 5e-12 >seq1422 Length=277306 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| ||||| || ||||| |||| || | ||||||| ||||| ||||| Sbjct 271519 GTAGACTCCTTCTGAATATTGTAGTCAGCCAAAGTACGACCGTCCTCGAGCTGCTTGCCA 271460 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || | |||||| || || | |||||||||||| ||||||||| || Sbjct 271459 GCAAAGATCAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGGATCTTTTGCTTT 271400 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| | ||| ||||||| |||| ||||| ||||| || || || || Sbjct 271399 ACATTGTCGATCGAATCCGAGGGCTCCACGTCCAGCGTAATCGTCTTACCAGTCAAAGTC 271340 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| |||||||| Sbjct 271339 TTTACAAAAATTTGCAT 271323 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || ||||||| || || || ||||| |||| || | ||||| Sbjct 271306 AGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGCCAAAGTACGACCGTCC 271247 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| ||| | || || | |||||| || || | ||||||||||| Sbjct 271246 TCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGGAATTCCTTCCTTGTCC 271187 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||||| || || | ||| | || || ||| |||| || || ||| Sbjct 271186 TGGATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCACGTCCAAAGTGATCGTC 271127 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || || || | || ||||| || ||||||||| Sbjct 271126 TTACCAGTCAGAGTCTTGACGAAAATTTGCATT 271094 >seq1775 Length=332822 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | | ||| | |||| || || || || ||||| || ||||| ||| Sbjct 274998 CCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGCC 274939 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || | || || ||||| ||||| ||| | || || | ||||||||| || Sbjct 274938 AAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGA 274879 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| || || ||||| || | | | | |||| ||||||| Sbjct 274878 ATCCCTTCCTTGTCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACG 274819 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||| |||||||||||||| || | || ||||| || || |||||||| Sbjct 274818 TCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCATTTT 274769 >seq1110 Length=486086 Score = 98.7 bits (108), Expect = 8e-16 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 ||||||||||||| |||||||| || | || | || || || || ||||| ||| | | Sbjct 256292 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 256233 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | | | ||||||||| || | |||||||||||| ||| || || || || | | Sbjct 256232 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGT 256173 Query 21106 CGA--CAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163 | | | || | || || ||| |||| |||||||||||||| || ||||| ||||| Sbjct 256172 CAATGCTGTCTGAC--GGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGAC 256115 Query 21164 AAATATTTGCAT 21175 ||| || ||||| Sbjct 256114 AAAAATCTGCAT 256103 >seq1355 Length=184863 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||| ||| || || ||||||||| ||| ||||| Sbjct 90686 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCCAACTGCTTGCCA 90745 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| || | |||||||| || | ||||||||||| ||||| || ||| Sbjct 90746 GCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTC 90805 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| | || ||||| || | || || ||||| || || || || Sbjct 90806 ACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCTTTCCCGTCAAAGTC 90865 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 90866 TTGACGAAAATCTGCAT 90882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422248058295140