Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq368 179 4e-40 seq1526 165 8e-36 seq1355 116 4e-21 >seq368 Length=262043 Score = 179 bits (198), Expect = 4e-40 Identities = 397/593 (67%), Gaps = 12/593 (2%) Strand=Plus/Minus Query 116603 CGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAG 116662 || || ||| | || ||||| || | | || |||||| |||||||| || || || Sbjct 28873 CGCTTTGTGCTCTTTCCCATTCAGGAGCACGAAGTGTGGCAGATGTACAAGAAAGCTGAA 28814 Query 116663 GCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGC 116722 || || |||||||| | ||||| | || ||| | || || || |||| || Sbjct 28813 GCTTCTTTCTGGACAGCTGAGGAACTCGATCTGGTGCACGATCTGAAAGATTGGGCTAGC 28754 Query 116723 TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGAC 116782 | | ||||||||||| ||||||| ||||| ||||| || || || || || || ||| Sbjct 28753 CTCACGGACAACGAGCGTTATTTCATTAAGCATGTGCTCGCTTTCTTTGCTGCTAGTGAC 28694 Query 116783 GGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCG 116842 |||||||| || || ||||| | | | ||| | || ||||||||| | ||||| Sbjct 28693 GGCATCGTGAATGAAAATCTAGCCATGAATTTTAGCAACGAAGTGCAGGTGCCAGAGGCT 28634 Query 116843 CGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC 116902 || ||||| ||||| ||||| ||||| || ||||| | ||||||||| |||| ||| Sbjct 28633 CGCTGCTTTTACGGGTTTCAAATCGCAATCGAGAATATACACTCGGAAGTGTACTCGCTT 28574 Query 116903 CTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAG 116962 | || |||||||| | || |||||| || | | | || |||||| Sbjct 28573 TTGATTGACACGTATATCAAAGACGCGATTGAGAAGGACCATCTACTACGTGCTATCGAG 28514 Query 116963 ACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTG----GATCGCCGGCAG 117018 || || || ||||||| | || || | ||||| ||| || |||| ||| Sbjct 28513 ACTATCCCTTGCGTCACCAAAAAAGCGCACTGGGCTCTGAAGTGGTGCGATCCACGG--- 28457 Query 117019 AGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTC 117078 | | ||| || || || ||||||| || || || || ||| | || || || Sbjct 28456 -GTCTCTTCCTATCCAGAACGGCTTTTGGCCTTTGCTGCAGTTGAAGGCATTTTTTTCTC 28398 Query 117079 GGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCT--GACT 117136 ||| ||| | |||| |||||||||||||| ||||| | ||||| || || | | Sbjct 28397 TGGCTCATTCTGCTCCATCTTTTGGCTCAAGAAGCGCGGTTTAATGCCTGGTCTAAGCTT 28338 Query 117137 TTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 |||| |||||||| || | ||||||||||| |||| |||||||| || Sbjct 28337 TTCA--AACGAGCTTATTAGCCGGGACGAGGGTATGCACACGGACTTTGCGTG 28287 >seq1526 Length=132622 Score = 165 bits (182), Expect = 8e-36 Identities = 416/625 (67%), Gaps = 17/625 (3%) Strand=Plus/Minus Query 116594 AACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAA 116653 || ||| ||| ||||| | || ||||| | || | || || |||| | ||||| Sbjct 119287 AATCCCAACCGTTTCGTCCTCTTTCCCATCAAGTATCACGATATTTGGCAATTCTACAAG 119228 Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGAC 116713 ||||| || || || |||||||| | ||| || || ||||| |||||||||| | | Sbjct 119227 AAGGCTGAAGCTTCCTTCTGGACTGCCGAAGAAGTTGACCTTTCCAAGGACATAAAACAT 119168 Query 116714 TGGGAGCGC----TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCT--GGCCTTT 116767 ||||| || |||| || | || || ||| | | |||| | ||| || Sbjct 119167 TGGGA-CGAAAAGTTGACTAACGATGAACG--ATTCTTTGTTTCTCGTGTTTTGGCTTTC 119111 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 || || ||| || || || ||||| || || |||| |||||||| || || || Sbjct 119110 TTTGCTGCCTCTGATGGTATTGTCAATGAAAACTTGGTTACTCGTTTCGCACAAGAAGTT 119051 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 || || | || || || ||||| ||||| || || ||| || || ||| | ||| | Sbjct 119050 CAAGTTCCAGAAGCTCGTTGCTTTTACGGGTTCCAAATCATGATTGAAAACATTCACGCT 118991 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAG---AAGCTCCGT 116944 |||||||| || |||||| || || ||| | || | | ||| || ||| | Sbjct 118990 GAAATGTACTCTCTCCTCATTGATACCTACATTCGTGACCCAGTTGAGCGTAAATTCCTT 118931 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 || || ||||| || || || || || || |||||| || ||||| |||| Sbjct 118930 TTC---AATGCCATTGACACCATCCCTTGTGTTCGCAAGAAGGGAGACTGGGCTATGCGT 118874 Query 117005 TGGATCGCCGG-CAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 ||||| | || | || | || || || ||||| || || || || ||||| || Sbjct 118873 TGGATTGAAAATCAAACTAGCTGTTTT-GGAGAACGCCTTGTTGCTTTTGCTGCCGTGGA 118815 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 || |||||||||| || || || ||||| || ||| | ||||| ||||| | || Sbjct 118814 AGGTATCTTCTTTTCCGGTTCATTTGCTGCCATTTTCTGGTTGAAGAAGCGCGGGTTGAT 118755 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTT 117183 |||||| |||| ||| ||| || || ||| | | ||||| ||||| ||||| || || Sbjct 118754 GCCCGGTTTGACCTTCTCCAATGAACTAATCAGCCGTGACGAAGGTCTTCATTGTGATTT 118695 Query 117184 TGCCTGTTTGCTGTTCAAGCATTTG 117208 |||||||||| | |||| ||| ||| Sbjct 118694 TGCCTGTTTGTTATTCAGGCACTTG 118670 >seq1355 Length=184863 Score = 116 bits (128), Expect = 4e-21 Identities = 169/232 (73%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || ||||| ||||| ||||| || || ||||| ||||||| || |||| Sbjct 91341 AATGCAGATTTTTGTAAAGACGCTGACGGGAAAGACAATCACTCTCGACGTAGA-GCCAT 91283 Query 40749 C-GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||| | | |||| | ||| | || |||| ||||| || || || || | ||| Sbjct 91282 CTGACTCGATCGATAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGAC 91224 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA-CGACTA 40865 |||||||| || || | || ||||| ||| |||| |||| || | | | | |||||| Sbjct 91223 CAGCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTAACTTTGAGCGACTA 91164 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | || || || || |||||||| || | || ||| Sbjct 91163 CAACATCCAGAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCGTGGAGGC 91112 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || || ||||| | ||||| || | || Sbjct 90882 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCC 90823 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| || || || || | ||||| Sbjct 90822 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCA 90764 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | || ||||| ||| |||| |||| || || || | ||||||||| Sbjct 90763 GCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAA 90704 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || || || || |||||||| || | || ||| Sbjct 90703 CATCCAGAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCGTGGAGGC 90655 Score = 102 bits (112), Expect = 8e-17 Identities = 163/230 (71%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || || ||||| | ||||| || | || Sbjct 91111 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCC 91052 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| || || || || | ||||| Sbjct 91051 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCA 90993 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | || ||||| ||| |||| |||| || || | | ||||||||| Sbjct 90992 GCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTTTGAGCGACTACAA 90933 Query 40869 CATCCAG-AAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||| |||||| | || || || || |||||||| || | || ||| Sbjct 90932 CATCCAGAAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCGTGGAGGC 90883 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 ||| ||||| ||||| || || || || | ||||||||||| || || | || ||| Sbjct 90573 GAAGAAATTTAGGACAAGGAAGGAATTCCACCTGACCAGCAACGTCTAATTTTTGCTGGC 90514 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||| |||| |||| || || || | |||||||||||||||||| ||| | || || Sbjct 90513 AAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAACATCCAGAAAGAGTCGACTCTT 90454 Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || ||||||||| || | || || Sbjct 90453 CACCTTGTGTTGCGCCTGCGTGGTGG 90428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515205256880400