Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1775 93.3 6e-14 >seq1775 Length=332822 Score = 93.3 bits (102), Expect = 6e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | ||||| || || ||||| || || || | || | || | Sbjct 274771 AATGCAGATTTTCGTCAAGACCCTGACGGGCAAGACCATTACGCTGGACGTGGAGCCCTC 274830 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||| ||| ||| | |||||||||||||| || || ||||| || ||||| || || Sbjct 274831 GGATAGCATTGACAATGTCAAACAGAAAATTCAGGACAAGGAAGGGATTCCACCCGACCA 274890 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || ||||| || || || | || ||| | || || || | ||| || || Sbjct 274891 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGGACTTTGGCAGACTACAA 274950 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||| |||||||| || |||| | || || ||| | || || ||| Sbjct 274951 TATTCAGAAAGAATCGACGCTGCACCTCGTGTTGCGTCTGCGTGGCGGT 274999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755435555472000